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L3_083_000G1_scaffold_167

Search features with annotation key words

Displaying items 1-30 of 124 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_167_1
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2..274
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90A9 RepID=R0BGI5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO30923.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L3_083_000G1_scaffold_167_2
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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271..1077
DNA (807bp) protein (269aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=A7VE21_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ12059.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_083_000G1_scaffold_167_3
Brachyspira murdochii, Brachyspira, Brachyspirales, Spirochaetia, Spirochaetes, Bacteria

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comp(1172..2563)
DNA (1392bp) protein (464aa)
Sodium/glutamate symporter n=1 Tax=Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150) RepID=D5U4A7_BRAM5
sodium/glutamate symporter
Sodium/glutamate symporter {ECO:0000313|EMBL:ADG72288.1}; TaxID=526224 species="Bacteria; Spirochaetes; Brachyspirales; Brachyspiraceae; Brachyspira.;" source="Brachyspira murdochii (strain ATCC 51284 / DSM 12563 / 56-150); (Serpulina murdochii).;"
L3_083_000G1_scaffold_167_4
Clostridium sp. ASF502, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2690..3967)
DNA (1278bp) protein (426aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ASF502 RepID=N2ANL5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMZ27680.1}; TaxID=97139 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASF502.;"
Di-and tricarboxylate transporters
L3_083_000G1_scaffold_167_5
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4039..5496)
DNA (1458bp) protein (486aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RYP1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC50484.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
abgB; aminobenzoyl-glutamate utilization protein B
L3_083_000G1_scaffold_167_6
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5866..7185
DNA (1320bp) protein (440aa)
HTH domain-containing protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RDC3_9CLOT
HTH domain-containing protein {ECO:0000313|EMBL:CDC46878.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
hypothetical protein
L3_083_000G1_scaffold_167_7
unknown

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7352..7738
DNA (387bp) protein (129aa)

This feature has no annotations

L3_083_000G1_scaffold_167_8
unknown

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8097..8594
DNA (498bp) protein (166aa)

This feature has no annotations

L3_083_000G1_scaffold_167_9
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10146..10655)
DNA (510bp) protein (170aa)
Resolvase protein n=2 Tax=Oscillibacter RepID=U2QEA2_9FIRM
Resolvase protein {ECO:0000313|EMBL:ERK62559.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
putative recombinase
L3_083_000G1_scaffold_167_10
unknown

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comp(10595..10978)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Oscillibacter valericigenes (strain DSM 18026 / NBRC 101213 / Sjm18-20) RepID=G4KS42_OSCVS
L3_083_000G1_scaffold_167_11
Pseudoflavonifractor capillosus, Pseudoflavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

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11107..11265
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Pseudoflavonifractor capillosus ATCC 29799 RepID=A6NWE6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDM99483.1}; TaxID=411467 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Pseudoflavonifractor.;" source="Pseudoflavonifractor capillosus ATCC 29799.;"
L3_083_000G1_scaffold_167_12
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11279..12061
DNA (783bp) protein (261aa)
Metal cation transporter, ZIP family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DFG4_9CLOT
Metal cation transporter, ZIP family {ECO:0000313|EMBL:ERI78286.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
zinc/iron permease
L3_083_000G1_scaffold_167_13
Butyricicoccus pullicaecorum, Butyricicoccus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12168..12392
DNA (225bp) protein (75aa)
Heavy metal-associated domain protein n=1 Tax=Oscillibacter sp. KLE 1745 RepID=U2QTY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOQ38751.1}; TaxID=1203606 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Butyricicoccus.;" source="Butyricicoccus pullicaecorum 1.2.;"
Copper chaperone
L3_083_000G1_scaffold_167_14
Oscillibacter sp. KLE 1745, Oscillibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12458..12601
DNA (144bp) protein (48aa)
Transcriptional regulator, AraC family n=2 Tax=Oscillibacter RepID=U2RXJ6_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERK59687.1}; TaxID=1226323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Oscillospiraceae; Oscillibacter.;" source="Oscillibacter sp. KLE 1745.;"
L3_083_000G1_scaffold_167_15
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12849..13772
DNA (924bp) protein (308aa)
Transcriptional regulator, LysR family n=2 Tax=Clostridiales RepID=U2CB28_9CLOT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ERI81193.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Transcriptional regulator
L3_083_000G1_scaffold_167_16
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13869..15482
DNA (1614bp) protein (538aa)
Nickel ABC transporter, periplasmic nickel-binding protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BSQ8_9CLOT
Nickel ABC transporter, periplasmic nickel-binding protein {ECO:0000313|EMBL:ERI81194.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
nickel ABC transporter, periplasmic nickel-binding protein
L3_083_000G1_scaffold_167_17
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15557..16495
DNA (939bp) protein (313aa)
Nickel ABC transporter, permease subunit NikB n=2 Tax=Clostridiales RepID=H1CFU4_9FIRM
Putative nickel ABC transporter, permease subunit NikB {ECO:0000313|EMBL:ERI81195.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_083_000G1_scaffold_167_18
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16499..17323
DNA (825bp) protein (275aa)
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=H1CFU3_9FIRM
Putative nickel ABC transporter, permease subunit NikC {ECO:0000313|EMBL:ERI81196.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_083_000G1_scaffold_167_19
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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17320..18150
DNA (831bp) protein (277aa)
ABC transporter, ATP-binding protein n=2 Tax=Clostridiales RepID=U2DIC5_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:ERI81197.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
L3_083_000G1_scaffold_167_20
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18143..18946
DNA (804bp) protein (268aa)
Oligopeptide ABC transporter, ATP-binding protein OppF family protein n=2 Tax=Clostridiales RepID=U2CB31_9CLOT
Oligopeptide ABC transporter, ATP-binding protein OppF family protein {ECO:0000313|EMBL:ERI81198.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L3_083_000G1_scaffold_167_21
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18943..19875
DNA (933bp) protein (311aa)
Succinylglutamate desuccinylase/aspartoacylase family protein n=2 Tax=Clostridiales RepID=U2BSR0_9CLOT
Succinylglutamate desuccinylase/aspartoacylase family protein {ECO:0000313|EMBL:ERI81199.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Predicted deacylase
L3_083_000G1_scaffold_167_22
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20164..21408)
DNA (1245bp) protein (415aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
putative two-component histidine kinase (EC:2.7.13.3)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DBS0_9CLOT
L3_083_000G1_scaffold_167_23

Not on your lists

comp(21402..21884)
DNA (483bp) protein (161aa)
Two component response regulator (Fragment) n=1 Tax=human gut metagenome RepID=K1RTF5_9ZZZZ
Two component response regulator {ECO:0000313|EMBL:EKC46689.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
OmpR family two-component response regulator
L3_083_000G1_scaffold_167_24
Lachnospiraceae bacterium JC7, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21900..22079)
DNA (180bp) protein (60aa)
transcriptional regulator n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B5C999
Response regulator (CheY receiver domain and winged-helix DNA-binding domain-containing protein) {ECO:0000313|EMBL:ETP73198.1}; TaxID=1165092 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium JC7.;"
response regulator receiver protein
L3_083_000G1_scaffold_167_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22299..24218
DNA (1920bp) protein (640aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H9C3_9FIRM
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EEU95472.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
RND family efflux transporter, MFP subunit
L3_083_000G1_scaffold_167_26
[Eubacterium] dolichum, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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24479..25420
DNA (942bp) protein (314aa)
HD domain protein n=2 Tax=Firmicutes RepID=A8RFR6_9FIRM
HD domain protein {ECO:0000313|EMBL:EDP10314.1}; TaxID=428127 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="[Eubacterium] dolichum DSM 3991.;"
hypothetical protein
L3_083_000G1_scaffold_167_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25683..27044)
DNA (1362bp) protein (454aa)
D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46778.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_083_000G1_scaffold_167_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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27176..27583
DNA (408bp) protein (136aa)
Competence protein ComEA n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD81_9FIRM
Competence protein ComEA {ECO:0000313|EMBL:EGJ46777.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_083_000G1_scaffold_167_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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27626..28339
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46776.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
OmpR family two-component response regulator
L3_083_000G1_scaffold_167_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28368..29855
DNA (1488bp) protein (496aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative two-component histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XD79_9FIRM
Displaying items 1-30 of 124 in total

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