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L3_083_000G1_scaffold_228

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_228_1
unknown

Not on your lists

3..194
DNA (192bp) protein (64aa)

This feature has no annotations

L3_083_000G1_scaffold_228_2
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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191..559
DNA (369bp) protein (123aa)
UPF0122 protein HMPREF9467_03464 n=1 Tax=Clostridium sp. CAG:91 RepID=R6X219_9CLOT
UPF0122 protein BN808_01287 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_000G1_scaffold_228_3
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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570..1949
DNA (1380bp) protein (460aa)
Signal recognition particle protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VU79_9CLOT
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
signal recognition particle protein
L3_083_000G1_scaffold_228_4
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2036..2281
DNA (246bp) protein (82aa)
30S ribosomal protein S16 n=1 Tax=Clostridium sp. CAG:91 RepID=R6VPP0_9CLOT
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
rpsP; 30S ribosomal protein S16
L3_083_000G1_scaffold_228_5
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2313..2540
DNA (228bp) protein (76aa)
UPF0109 protein BN749_01394 n=2 Tax=Firmicutes RepID=R6EDA4_9FIRM
UPF0109 protein BN808_01284 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
RNA binding protein
L3_083_000G1_scaffold_228_6
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2635..3147
DNA (513bp) protein (171aa)
Ribosome maturation factor RimM n=1 Tax=Clostridium sp. CAG:91 RepID=R6W1B7_9CLOT
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
rimM; 16S rRNA-processing protein RimM
L3_083_000G1_scaffold_228_7
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3144..4526
DNA (1383bp) protein (461aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Clostridium sp. CAG:91 RepID=R6VPN8_9CLOT
tRNA (guanine-N1)-methyltransferase
L3_083_000G1_scaffold_228_8
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4642..4989
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1 Tax=Clostridium sp. CAG:91 RepID=R6X212_9CLOT
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
rplS; 50S ribosomal protein L19
L3_083_000G1_scaffold_228_9
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5108..5683
DNA (576bp) protein (192aa)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
lepB2; signal peptidase I LepB2 (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Clostridium sp. CAG:91 RepID=R6W8R3_9CLOT
L3_083_000G1_scaffold_228_10
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

5708..6547
DNA (840bp) protein (280aa)
Ribosome biogenesis GTPase A n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EK58_9FIRM
Ribosome biogenesis GTPase A {ECO:0000256|PIRNR:PIRNR006230}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
ribosome biogenesis GTP-binding protein YlqF
L3_083_000G1_scaffold_228_11
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6564..7097
DNA (534bp) protein (178aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Clostridium sp. CAG:91 RepID=R6X205_9CLOT
L3_083_000G1_scaffold_228_12
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7118..7876
DNA (759bp) protein (253aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Ribonuclease HII n=1 Tax=Clostridium sp. CAG:91 RepID=R6W8Q4_9CLOT
rnhB; ribonuclease HII
L3_083_000G1_scaffold_228_13
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7905..9533
DNA (1629bp) protein (543aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W1A1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD00519.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_000G1_scaffold_228_14
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9733..10041
DNA (309bp) protein (103aa)
FlhB domain-containing protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W8P9_9CLOT
FlhB domain-containing protein {ECO:0000313|EMBL:CDD00516.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
FlhB domain-containing protein
L3_083_000G1_scaffold_228_15
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10038..10406
DNA (369bp) protein (123aa)
UPF0102 protein BN808_01273 n=1 Tax=Clostridium sp. CAG:91 RepID=R6VU58_9CLOT
UPF0102 protein BN808_01273 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_000G1_scaffold_228_16
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10372..11262
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W196_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD00514.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_000G1_scaffold_228_17
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11391..12089
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VPM1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD00513.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_083_000G1_scaffold_228_18
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12086..14767
DNA (2682bp) protein (894aa)
two component system histidine kinase (EC:2.7.13.3)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6X1Z7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD00512.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
L3_083_000G1_scaffold_228_19
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14870..16069)
DNA (1200bp) protein (400aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W8P4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD00511.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
L3_083_000G1_scaffold_228_20
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16258..17610
DNA (1353bp) protein (451aa)
PDZ domain protein n=2 Tax=root RepID=R6VU53_9CLOT
PDZ domain protein {ECO:0000313|EMBL:CDD00510.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Fe-S oxidoreductase, related to NifB/MoaA family
L3_083_000G1_scaffold_228_21
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17645..18985
DNA (1341bp) protein (447aa)
GTPase Der n=3 Tax=root RepID=R6W193_9CLOT
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
ribosome-associated GTPase EngA
L3_083_000G1_scaffold_228_22
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18985..19671
DNA (687bp) protein (229aa)
Glycerol-3-phosphate acyltransferase n=1 Tax=Clostridium sp. CAG:91 RepID=R6VPL7_9CLOT
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_000G1_scaffold_228_23
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19675..20688
DNA (1014bp) protein (338aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Clostridium sp. CAG:91 RepID=R6X1Z4_9CLOT
NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein
L3_083_000G1_scaffold_228_24
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

21159..22382
DNA (1224bp) protein (408aa)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02006, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02006}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
Tyrosine--tRNA ligase n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EK31_9FIRM
L3_083_000G1_scaffold_228_25
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22541..24070
DNA (1530bp) protein (510aa)
Iron only hydrogenase large subunit, C-terminal domain (EC:1.12.7.2)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W188_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD00504.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
L3_083_000G1_scaffold_228_26
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24248..24898
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6X1Z1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD00502.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Predicted membrane protein
L3_083_000G1_scaffold_228_27
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25086..26501
DNA (1416bp) protein (472aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase n=2 Tax=root RepID=R6VU39_9CLOT
L3_083_000G1_scaffold_228_28
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26494..28437
DNA (1944bp) protein (648aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Superfamily I DNA and RNA helicases (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W176_9CLOT
L3_083_000G1_scaffold_228_29
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28409..28741)
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=root RepID=R6X1Y7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD00497.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_000G1_scaffold_228_30
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28900..30855
DNA (1956bp) protein (652aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VU07_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD00495.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
alpha amylase
Displaying items 1-30 of 75 in total

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