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L3_083_000G1_scaffold_492

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_492_1
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(89..1237)
DNA (1149bp) protein (383aa)
Nickel ABC transporter, periplasmic nickel-binding protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BSQ8_9CLOT
Nickel ABC transporter, periplasmic nickel-binding protein {ECO:0000313|EMBL:ERI81194.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
nickel ABC transporter, periplasmic nickel-binding protein
L3_083_000G1_scaffold_492_2
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1346..2248)
DNA (903bp) protein (301aa)
Transcriptional regulator, LysR family n=2 Tax=Clostridiales RepID=U2CB28_9CLOT
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ERI81193.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Transcriptional regulator
L3_083_000G1_scaffold_492_3
Methanocorpusculum labreanum, Methanocorpusculum, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(2333..3265)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) RepID=A2SQ63_METLZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN06469.1}; TaxID=410358 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanocorpusculaceae; Methanocorpusculum.;" source="Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z).;"
L3_083_000G1_scaffold_492_4
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3291..4178)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RXA5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49994.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
GDSL-like Lipase/Acylhydrolase.
L3_083_000G1_scaffold_492_5
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4202..5608)
DNA (1407bp) protein (469aa)
MBOAT family protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D9S2_9CLOT
MBOAT family protein {ECO:0000313|EMBL:EEG51915.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
argI; AlgI-related protein
L3_083_000G1_scaffold_492_6
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5776..7047)
DNA (1272bp) protein (424aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IEJ5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60048.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
L3_083_000G1_scaffold_492_7
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7162..8514)
DNA (1353bp) protein (451aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IEJ4_9CLOT
Signal transduction histidine kinase
L3_083_000G1_scaffold_492_8
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(8511..9194)
DNA (684bp) protein (228aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HKM8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE97773.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_083_000G1_scaffold_492_9
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9256..10638)
DNA (1383bp) protein (461aa)
Glutamate synthase (NADPH), homotetrameric {ECO:0000313|EMBL:EEG56116.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EEG56116.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
sulfide dehydrogenase (flavoprotein) subunit SudA (EC:1.4.1.13 1.4.1.14 1.97.-.-)
Glutamate synthase (NADPH), homotetrameric n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXS8_9CLOT
L3_083_000G1_scaffold_492_10
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10638..11528)
DNA (891bp) protein (297aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.18.1.2 1.97.-.-)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HR91_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE96229.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
L3_083_000G1_scaffold_492_11
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11551..12438)
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae 90B8 RepID=R0B4T8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ39232.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
hypothetical protein
L3_083_000G1_scaffold_492_12
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12563..13063)
DNA (501bp) protein (167aa)
Dihydrofolate reductase n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HR93_9CLOT
Dihydrofolate reductase {ECO:0000313|EMBL:EHE96231.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
dihydrofolate reductase subunit
L3_083_000G1_scaffold_492_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13060..13569)
DNA (510bp) protein (170aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J3B3_9CLOT
L3_083_000G1_scaffold_492_14
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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13867..14697
DNA (831bp) protein (277aa)
Thymidylate synthase {ECO:0000256|SAAS:SAAS00215270}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00273274};; EC=2.1.1.45 {ECO:0000256|SAAS:SAAS00215290};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ENL4_9FIRM
L3_083_000G1_scaffold_492_15
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14709..18350)
DNA (3642bp) protein (1214aa)
ATP-dependent helicase/nuclease subunit A {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00044589}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00274943};; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01451, ECO:0000256|SAAS:SAAS00145970};; ATP-dependent helicase/nuclease AddA {ECO:0000256|HAMAP-Rule:MF_01451}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
ATP-dependent helicase/nuclease subunit A n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HR99_9CLOT
recombination helicase AddA
L3_083_000G1_scaffold_492_16
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18310..21798)
DNA (3489bp) protein (1163aa)
ATP-dependent nuclease subunit B n=1 Tax=Clostridium clostridioforme 2_1_49FAA RepID=G5I0N1_9CLOT
Helicase-exonuclease AddAB, AddB subunit {ECO:0000313|EMBL:ENZ09589.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
ATP-dependent nuclease subunit B
L3_083_000G1_scaffold_492_17
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21876..22313
DNA (438bp) protein (146aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HRA1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE95988.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
hypothetical protein
L3_083_000G1_scaffold_492_18
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22394..24808)
DNA (2415bp) protein (805aa)
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:KJJ75613.1}; EC=1.17.4.2 {ECO:0000313|EMBL:KJJ75613.1};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HRA3_9CLOT
anaerobic ribonucleoside-triphosphate reductase
L3_083_000G1_scaffold_492_19
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25000..26265)
DNA (1266bp) protein (422aa)
GTPase HflX n=9 Tax=Clostridium RepID=G5I0M0_9CLOT
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
GTP-binding protein HflX
L3_083_000G1_scaffold_492_20
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26270..27274)
DNA (1005bp) protein (335aa)
Tetratricopeptide repeat protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ENK5_9FIRM
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EEQ59735.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L3_083_000G1_scaffold_492_21
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27271..27798)
DNA (528bp) protein (176aa)
deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23)
DUTP diphosphatase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXR0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY43434.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_083_000G1_scaffold_492_22
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27829..28323)
DNA (495bp) protein (165aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
ribonucleoside-triphosphate reductase class III activase subunit (EC:1.97.1.4 1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CXQ9_9CLOT
L3_083_000G1_scaffold_492_23
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28402..29115)
DNA (714bp) protein (238aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IKQ6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI57924.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Predicted ATPase
L3_083_000G1_scaffold_492_24
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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29460..29663
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium A4 RepID=R9IW55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS23157.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
L3_083_000G1_scaffold_492_25
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29971..30216
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2RGB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERK49772.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_083_000G1_scaffold_492_26
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(30430..31704)
DNA (1275bp) protein (425aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
phosphoribosylamine--glycine ligase (EC:6.3.4.13)
Phosphoribosylamine--glycine ligase n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D491_9CLOT
L3_083_000G1_scaffold_492_27
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31721..32314)
DNA (594bp) protein (198aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=2 Tax=Clostridium bolteae RepID=N9ZY75_9CLOT
L3_083_000G1_scaffold_492_28
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32308..33339)
DNA (1032bp) protein (344aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
phosphoribosylaminoimidazole synthetase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZEM2_9CLOT
L3_083_000G1_scaffold_492_29
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33363..33878)
DNA (516bp) protein (172aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=3 Tax=Clostridium bolteae RepID=A8RT33_9CLOT
L3_083_000G1_scaffold_492_30
unknown

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comp(34036..34233)
DNA (198bp) protein (66aa)

This feature has no annotations

Displaying items 1-30 of 51 in total

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