ggKbase home page

L3_083_000G1_scaffold_504

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_504_1
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..181)
DNA (180bp) protein (60aa)
Citrate lyase acyl carrier protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDM9_9FIRM
Citrate lyase acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_00805}; Citrate lyase gamma chain {ECO:0000256|HAMAP-Rule:MF_00805}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Citrate lyase acyl carrier protein
L3_083_000G1_scaffold_504_2
Clostridium sp. CAG:299, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(347..1654)
DNA (1308bp) protein (436aa)
Citrate transporter CitMHS family n=1 Tax=Clostridium sp. CAG:299 RepID=R6ZB19_9CLOT
Citrate transporter CitMHS family {ECO:0000313|EMBL:CDD38096.1}; TaxID=1262792 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:299.;"
citrate transporter, CitMHS family
L3_083_000G1_scaffold_504_3
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2365..2679
DNA (315bp) protein (105aa)
Transposase, IS4 family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DAL5_CLOS4
putative transposase for insertion sequence element
Transposase, IS4 family {ECO:0000313|EMBL:ERI99849.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
L3_083_000G1_scaffold_504_4
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(2738..2932)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YFX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14071.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_083_000G1_scaffold_504_5
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3024..3479)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDA5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46801.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_083_000G1_scaffold_504_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3695..5071)
DNA (1377bp) protein (459aa)
Uracil permease n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDA6_9FIRM
Uracil permease {ECO:0000313|EMBL:EGJ46802.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
uracil-xanthine permease
L3_083_000G1_scaffold_504_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5442..6701
DNA (1260bp) protein (420aa)
lysA; putative diaminopimelate decarboxylase (EC:4.1.1.20)
Diaminopimelate decarboxylase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDA7_9FIRM
Diaminopimelate decarboxylase {ECO:0000313|EMBL:EGJ46803.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_083_000G1_scaffold_504_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6966..7343
DNA (378bp) protein (126aa)
Holin-like protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDA8_9FIRM
Holin-like protein {ECO:0000313|EMBL:EGJ46804.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_083_000G1_scaffold_504_9
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7336..8025
DNA (690bp) protein (230aa)
TIGR00659 family protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDA9_9FIRM
TIGR00659 family protein {ECO:0000313|EMBL:EGJ46805.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
LrgB family protein
L3_083_000G1_scaffold_504_10
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8088..9182)
DNA (1095bp) protein (365aa)
NLP/P60 protein n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TT82_ALKMQ
NLP/P60 protein
NLP/P60 protein {ECO:0000313|EMBL:ABR49400.1}; Flags: Precursor;; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens (strain QYMF).;"
L3_083_000G1_scaffold_504_11
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9396..9584)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A1I5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCX36850.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:1013.;"
putative S-layer protein
L3_083_000G1_scaffold_504_12
unknown

Not on your lists

9730..10011
DNA (282bp) protein (94aa)

This feature has no annotations

L3_083_000G1_scaffold_504_13
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10013..10360)
DNA (348bp) protein (116aa)
Nucleoid-associated protein HMPREF0866_02327 n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFF2_9FIRM
Nucleoid-associated protein HMPREF0866_02327 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_083_000G1_scaffold_504_14
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10392..12113)
DNA (1722bp) protein (574aa)
dnaX; DNA polymerase III gamma/tau subunit (EC:2.7.7.7)
DNA polymerase III, subunit gamma and tau n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XFF3_9FIRM
DNA polymerase III, subunit gamma and tau {ECO:0000313|EMBL:EGJ46173.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_083_000G1_scaffold_504_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12844..14022
DNA (1179bp) protein (393aa)
putative RNA helicase (EC:3.6.1.-)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEC1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46421.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_083_000G1_scaffold_504_16
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

14019..14618
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XXI1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14389.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_083_000G1_scaffold_504_17
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

14725..14940
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YGQ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14391.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
phage shock protein PspC
L3_083_000G1_scaffold_504_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15041..15898
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46423.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
acetyltransferase
L3_083_000G1_scaffold_504_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16223..17575
DNA (1353bp) protein (451aa)
gdh; glutamate dehydrogenase (EC:1.4.1.2)
Glutamate dehydrogenase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEC4_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_083_000G1_scaffold_504_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17827..18186
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEC5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46425.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_083_000G1_scaffold_504_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18339..19670)
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEN1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46531.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Hemolysins and related proteins containing CBS domains
L3_083_000G1_scaffold_504_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19837..20463)
DNA (627bp) protein (209aa)
Chloramphenicol O-acetyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XBF6_9FIRM
Chloramphenicol O-acetyltransferase {ECO:0000313|EMBL:EGJ47684.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
chloramphenicol acetyltransferase
L3_083_000G1_scaffold_504_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20643..21209
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46529.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_083_000G1_scaffold_504_24
unknown

Not on your lists

comp(21247..21525)
DNA (279bp) protein (93aa)

This feature has no annotations

L3_083_000G1_scaffold_504_25
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(21555..22334)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2XYZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14924.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
ABC transporter permease
L3_083_000G1_scaffold_504_26
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(22334..23059)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YEY0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14923.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
ABC transporter
L3_083_000G1_scaffold_504_27
Firmicutes bacterium ASF500, Firmicutes, Bacteria

Not on your lists

comp(23056..23415)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YH43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL14922.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
Predicted transcriptional regulators
L3_083_000G1_scaffold_504_28
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23665..25578
DNA (1914bp) protein (638aa)
Chaperone protein HtpG n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEN0_9FIRM
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
htpG; chaperone protein HtpG
L3_083_000G1_scaffold_504_29
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25921..26403
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEH5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46475.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
MarR family transcripitonal regulator
L3_083_000G1_scaffold_504_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26400..27731
DNA (1332bp) protein (444aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEH4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46474.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
MatE efflux family protein
Displaying items 1-30 of 53 in total

View Taxonomy