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L3_083_000G1_scaffold_657

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Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_657_1
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(431..2134)
DNA (1704bp) protein (568aa)
Carbon starvation protein, predicted membrane protein n=4 Tax=Clostridiales RepID=D4MUA7_9FIRM
Carbon starvation protein CstA {ECO:0000313|EMBL:EFV15327.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Carbon starvation protein, predicted membrane protein
L3_083_000G1_scaffold_657_2
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2560..3918)
DNA (1359bp) protein (453aa)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase {ECO:0000256|RuleBase:RU004136}; EC=6.3.2.10 {ECO:0000256|RuleBase:RU004136};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase (EC:6.3.2.10)
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Lachnospiraceae bacterium CAG:25 RepID=R5ZAX8_9FIRM
L3_083_000G1_scaffold_657_3
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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4080..7535
DNA (3456bp) protein (1152aa)
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
DNA polymerase III catalytic subunit, DnaE type n=4 Tax=Clostridiales RepID=D4MUA9_9FIRM
L3_083_000G1_scaffold_657_4
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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7623..8612
DNA (990bp) protein (330aa)
6-phosphofructokinase (EC:2.7.1.11)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
6-phosphofructokinase n=5 Tax=Clostridiales RepID=D4MUB0_9FIRM
L3_083_000G1_scaffold_657_5
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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8684..10036
DNA (1353bp) protein (451aa)
TrkH family potassium uptake protein n=2 Tax=Lachnospiraceae RepID=E5VPB0_9FIRM
TrkH family potassium uptake protein {ECO:0000313|EMBL:CDA31239.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Trk-type K+ transport systems, membrane components
L3_083_000G1_scaffold_657_6
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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10090..10737
DNA (648bp) protein (216aa)
TrkA-N domain-containing protein n=2 Tax=Lachnospiraceae RepID=E5VPA9_9FIRM
TrkA-N domain-containing protein {ECO:0000313|EMBL:CDA31240.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
K+ transport systems, NAD-binding component
L3_083_000G1_scaffold_657_7
unknown

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10760..11533
DNA (774bp) protein (258aa)
rRNA methylases n=4 Tax=Clostridiales RepID=D4MUB3_9FIRM
rRNA methylases
rRNA methylases {ECO:0000313|EMBL:CBL38979.1}; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
L3_083_000G1_scaffold_657_8
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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11534..11965
DNA (432bp) protein (144aa)
NfeD-like protein n=2 Tax=Lachnospiraceae RepID=E5VPA7_9FIRM
NfeD-like protein {ECO:0000313|EMBL:CDA31242.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Membrane protein implicated in regulation of membrane protease activity
L3_083_000G1_scaffold_657_9
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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11967..12953
DNA (987bp) protein (329aa)
Membrane protease subunits, stomatin/prohibitin homologs n=5 Tax=Clostridiales RepID=D4MUB5_9FIRM
SPFH domain/Band 7 family protein {ECO:0000313|EMBL:EFV15319.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
Membrane protease subunits, stomatin/prohibitin homologs
L3_083_000G1_scaffold_657_10
unknown

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13058..13708
DNA (651bp) protein (217aa)
Lysophospholipase L1 and related esterases (EC:3.1.1.2)
Lysophospholipase L1 and related esterases {ECO:0000313|EMBL:CBL38982.1}; EC=3.1.1.2 {ECO:0000313|EMBL:CBL38982.1};; TaxID=245018 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SSC/2.;"
Lysophospholipase L1 and related esterases n=5 Tax=Clostridiales RepID=D4MUB6_9FIRM
L3_083_000G1_scaffold_657_11
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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13821..14774
DNA (954bp) protein (318aa)
ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
Ornithine carbamoyltransferase n=3 Tax=Clostridiales RepID=D4MUB7_9FIRM
L3_083_000G1_scaffold_657_12
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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14790..15770
DNA (981bp) protein (327aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1QCE2_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
L3_083_000G1_scaffold_657_13
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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15816..16148
DNA (333bp) protein (111aa)
Uncharacterized protein n=5 Tax=Clostridiales RepID=B0P4K9_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA31247.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_083_000G1_scaffold_657_14
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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16152..16916
DNA (765bp) protein (255aa)
pantothenate kinase (EC:2.7.1.33)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
Type III pantothenate kinase n=5 Tax=Clostridiales RepID=D4MUC0_9FIRM
L3_083_000G1_scaffold_657_15
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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16903..17901
DNA (999bp) protein (333aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
tRNA-dihydrouridine synthase n=4 Tax=Clostridiales RepID=D4MUC1_9FIRM
tRNA-U20-dihydrouridine synthase
L3_083_000G1_scaffold_657_16
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

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17971..18450
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=5 Tax=Clostridiales RepID=D4MUC2_9FIRM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_083_000G1_scaffold_657_17
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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18466..20373
DNA (1908bp) protein (636aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6)
Lysine--tRNA ligase n=3 Tax=Lachnospiraceae RepID=E5VP98_9FIRM
L3_083_000G1_scaffold_657_18
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

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20705..22903
DNA (2199bp) protein (733aa)
Ser/Thr phosphatase family protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C4M5_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:CDD72905.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
Calcineurin-like phosphoesterase.
L3_083_000G1_scaffold_657_19
Anaerostipes hadrus, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

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22906..24018
DNA (1113bp) protein (371aa)
Flagellin-like domain protein n=2 Tax=Lachnospiraceae RepID=L1PT76_9FIRM
Flagellin-like domain protein {ECO:0000313|EMBL:EKY18929.1}; TaxID=649757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes hadrus DSM 3319.;"
archaeal flagellin N-terminal-like domain
L3_083_000G1_scaffold_657_20
Lactobacillus plantarum, Lactobacillus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(24329..25150)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Lactobacillus plantarum EGD-AQ4 RepID=T5JW44_LACPN
Uncharacterized protein {ECO:0000313|EMBL:EQM53902.1}; TaxID=1382301 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus.;" source="Lactobacillus plantarum EGD-AQ4.;"
DeoR family transcriptional regulator
L3_083_000G1_scaffold_657_21
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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25526..25951
DNA (426bp) protein (142aa)
PTS system fructose IIA component n=7 Tax=Firmicutes RepID=E4LVM6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY88168.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
PTS system fructose subfamily transporter subunit IIA
L3_083_000G1_scaffold_657_22
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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25953..26456
DNA (504bp) protein (168aa)
PTS system sorbose subfamily IIB component n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SR86_9FIRM
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EFP59949.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
PTS system transporter subunit IIB
L3_083_000G1_scaffold_657_23
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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26479..27264
DNA (786bp) protein (262aa)
PTS system sorbose-specific iic component n=6 Tax=Firmicutes RepID=E4LVM4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY88165.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
PTS system transporter subunit IIC
L3_083_000G1_scaffold_657_24
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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27267..28112
DNA (846bp) protein (282aa)
PTS system mannose/fructose/sorbose family IID component n=1 Tax=Erysipelotrichaceae bacterium 3_1_53 RepID=E2SR88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX72660.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
PTS system mannose/fructose/sorbose family transporter subunit IID
L3_083_000G1_scaffold_657_25
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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28149..28976
DNA (828bp) protein (276aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VV19_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY88163.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_083_000G1_scaffold_657_26
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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28981..30069
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6VS27_9FIRM
Mannitol dehydrogenase {ECO:0000313|EMBL:KGJ53876.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Mannitol dehydrogenase C-terminal domain protein
L3_083_000G1_scaffold_657_27
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

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30177..30332
DNA (156bp) protein (52aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XXR2_9FIRM
L3_083_000G1_scaffold_657_28
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

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30873..31088
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C2I8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD72276.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
L3_083_000G1_scaffold_657_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31248..31529
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8CDM4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD25498.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_083_000G1_scaffold_657_30
Firmicutes bacterium CAG:270, Firmicutes, Bacteria

Not on your lists

31601..32008
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:270 RepID=R7C4Q9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDD72278.1}; TaxID=1263014 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:270.;"
hypothetical protein
Displaying items 1-30 of 47 in total

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