ggKbase home page

L3_083_000G1_scaffold_660

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_660_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

127..615
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GA99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01250.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_083_000G1_scaffold_660_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

578..1540
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVM9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79784.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
XRE family transcriptional regulator
L3_083_000G1_scaffold_660_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1537..2556
DNA (1020bp) protein (340aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNB8_9FIRM
Signal transduction histidine kinase
L3_083_000G1_scaffold_660_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2704..3471
DNA (768bp) protein (256aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG99_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79782.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_083_000G1_scaffold_660_5
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3461..5563
DNA (2103bp) protein (701aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KQ36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN30578.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
ABC-type antimicrobial peptide transport system, permease component
L3_083_000G1_scaffold_660_6
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5582..6421
DNA (840bp) protein (280aa)
Possible metal-dependent membrane protease n=1 Tax=Clostridium sp. CAG:277 RepID=R7K2V2_9CLOT
Possible metal-dependent membrane protease {ECO:0000313|EMBL:CDE70206.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hypothetical protein
L3_083_000G1_scaffold_660_7
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6418..7272
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I2I1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31202.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
CAAX amino terminal protease family.
L3_083_000G1_scaffold_660_8
unknown

Not on your lists

7284..7388
DNA (105bp) protein (35aa)

This feature has no annotations

L3_083_000G1_scaffold_660_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7372..7569
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8C5J7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22011.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
BAAT / Acyl-CoA thioester hydrolase C terminal.
L3_083_000G1_scaffold_660_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7654..8253
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79770.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_083_000G1_scaffold_660_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8700..10052
DNA (1353bp) protein (451aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVK8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79764.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_083_000G1_scaffold_660_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10049..11554
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG80_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79762.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_083_000G1_scaffold_660_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11629..12666
DNA (1038bp) protein (346aa)
Deoxyguanosinetriphosphate triphosphohydrolase-like protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8J2_9FIRM
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
deoxyguanosinetriphosphate triphosphohydrolase-like protein
L3_083_000G1_scaffold_660_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12767..14470
DNA (1704bp) protein (568aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DNA primase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNW1_9FIRM
DNA primase
L3_083_000G1_scaffold_660_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14508..15767
DNA (1260bp) protein (420aa)
RNA polymerase sigma factor SigA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVK4_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
RNA polymerase, sigma 70 subunit, RpoD
L3_083_000G1_scaffold_660_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15799..16512
DNA (714bp) protein (238aa)
Predicted SAM-dependent methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN88_9FIRM
Predicted SAM-dependent methyltransferase {ECO:0000313|EMBL:CCZ79758.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted SAM-dependent methyltransferase
L3_083_000G1_scaffold_660_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16499..18163
DNA (1665bp) protein (555aa)
Uridine kinase (EC:2.7.1.48)
Uridine kinase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG76_9FIRM
Uridine kinase {ECO:0000313|EMBL:CCZ79757.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_083_000G1_scaffold_660_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18798..19193
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8I6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79756.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_083_000G1_scaffold_660_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19206..20045
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNV8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79755.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_083_000G1_scaffold_660_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20042..20734
DNA (693bp) protein (231aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVJ7_9FIRM
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:CCZ79754.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_083_000G1_scaffold_660_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20821..21741
DNA (921bp) protein (307aa)
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_00001}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN83_9FIRM
L3_083_000G1_scaffold_660_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21744..22196
DNA (453bp) protein (151aa)
Uncharacterized protein n=2 Tax=root RepID=R5VG71_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79752.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Aspartate carbamoyltransferase, regulatory subunit
L3_083_000G1_scaffold_660_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22210..22614)
DNA (405bp) protein (135aa)
Predicted membrane protein n=2 Tax=root RepID=R5V8I2_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CCZ79751.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted membrane protein
L3_083_000G1_scaffold_660_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22714..23343
DNA (630bp) protein (210aa)
Siroheme synthase domain-containing protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNV4_9FIRM
Siroheme synthase domain-containing protein {ECO:0000313|EMBL:CCZ79750.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
siroheme synthase, N-terminal domain
L3_083_000G1_scaffold_660_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23364..24335
DNA (972bp) protein (324aa)
porphobilinogen synthase (EC:4.2.1.24)
Delta-aminolevulinic acid dehydratase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVJ2_9FIRM
Delta-aminolevulinic acid dehydratase {ECO:0000313|EMBL:CCZ79749.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_083_000G1_scaffold_660_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24337..25611
DNA (1275bp) protein (425aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UN80_9FIRM
glutamate-1-semialdehyde 2,1-aminomutase
L3_083_000G1_scaffold_660_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25608..26858
DNA (1251bp) protein (417aa)
Glutamyl-tRNA reductase {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584}; Short=GluTR {ECO:0000256|HAMAP-Rule:MF_00087};; EC=1.2.1.70 {ECO:0000256|HAMAP-Rule:MF_00087, ECO:0000256|RuleBase:RU000584};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
glutamyl-tRNA reductase (EC:1.2.1.70)
Glutamyl-tRNA reductase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VG64_9FIRM
L3_083_000G1_scaffold_660_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26870..27754
DNA (885bp) protein (295aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Porphobilinogen deaminase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8H8_9FIRM
porphobilinogen deaminase
L3_083_000G1_scaffold_660_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27885..29390
DNA (1506bp) protein (502aa)
Porphobilinogen deaminase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNV1_9FIRM
Porphobilinogen deaminase {ECO:0000313|EMBL:CCZ79745.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
porphobilinogen deaminase
L3_083_000G1_scaffold_660_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29393..31624
DNA (2232bp) protein (744aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
replication restart DNA helicase PriA (EC:3.6.1.-)
Replication restart DNA helicase PriA n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVI7_9FIRM
Displaying items 1-30 of 47 in total

View Taxonomy