ggKbase home page

L3_083_000G1_scaffold_135

Search features with annotation key words

Displaying items 1-30 of 100 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_135_1
Lachnospiraceae bacterium 6_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..130
DNA (129bp) protein (43aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 6_1_63FAA RepID=F3AGR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG81341.1}; TaxID=658083 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_63FAA.;"
hypothetical protein
L3_083_000G1_scaffold_135_2
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(579..1643)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:303 RepID=R7IND7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE53229.1}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
L3_083_000G1_scaffold_135_3
Dorea sp. 5-2, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1683..2246)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Dorea sp. 5-2 RepID=R9N6V4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS79039.1}; TaxID=1235798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea sp. 5-2.;"
hypothetical protein
L3_083_000G1_scaffold_135_4
unknown

Not on your lists

2575..3168
DNA (594bp) protein (198aa)

This feature has no annotations

L3_083_000G1_scaffold_135_5
unknown

Not on your lists

3182..3940
DNA (759bp) protein (253aa)

This feature has no annotations

L3_083_000G1_scaffold_135_6
Clostridium sp. CAG:288, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3975..4805
DNA (831bp) protein (277aa)
ABC transporter n=1 Tax=[Clostridium] glycolicum RepID=UPI00036F7BEA
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDE16646.1}; TaxID=1262791 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:288.;"
ABC transporter family protein
L3_083_000G1_scaffold_135_7
unknown

Not on your lists

4891..5745
DNA (855bp) protein (285aa)

This feature has no annotations

L3_083_000G1_scaffold_135_8
unknown

Not on your lists

5782..7632
DNA (1851bp) protein (617aa)

This feature has no annotations

L3_083_000G1_scaffold_135_9
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7724..8908
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2BAI4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EMZ33749.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
hypothetical protein
L3_083_000G1_scaffold_135_10
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8965..9744
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5S730_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42736.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_083_000G1_scaffold_135_11
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9827..10549)
DNA (723bp) protein (241aa)
Response regulator of the LytR/AlgR family n=1 Tax=Clostridium sp. CAG:122 RepID=R5RUK9_9CLOT
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CCZ42294.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
LytTR family transcriptional regulator
L3_083_000G1_scaffold_135_12
unknown

Not on your lists

11017..11127
DNA (111bp) protein (37aa)

This feature has no annotations

L3_083_000G1_scaffold_135_13
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11460..12425
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RM16_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42295.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_083_000G1_scaffold_135_14
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12602..13495
DNA (894bp) protein (298aa)
Transcriptional regulator AraC family n=1 Tax=Clostridium sp. CAG:122 RepID=R5S5P5_9CLOT
Transcriptional regulator AraC family {ECO:0000313|EMBL:CCZ42296.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
AraC family transcriptional regulator
L3_083_000G1_scaffold_135_15
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13613..14278
DNA (666bp) protein (222aa)
Haloacid dehalogenase/epoxide hydrolase n=1 Tax=Clostridium sp. CAG:122 RepID=R5SB32_9CLOT
Haloacid dehalogenase/epoxide hydrolase {ECO:0000313|EMBL:CCZ42297.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
putative phosphatase/phosphohexomutase
L3_083_000G1_scaffold_135_16
Clostridium sp. CAG:230, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14367..15827
DNA (1461bp) protein (487aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:230 RepID=R6EDB1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA88087.1}; TaxID=1262782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:230.;"
hypothetical protein
L3_083_000G1_scaffold_135_17
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15902..16159)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RNR8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42298.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
L3_083_000G1_scaffold_135_18
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16152..16637)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RUL4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42299.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
L3_083_000G1_scaffold_135_19
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16847..17917
DNA (1071bp) protein (357aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
ABC-type spermidine/putrescine transport systems, ATPase components (EC:3.6.3.31)
ABC-type spermidine/putrescine transport systems ATPase components n=1 Tax=Clostridium sp. CAG:122 RepID=R5RM21_9CLOT
L3_083_000G1_scaffold_135_20
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17933..18769
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5S5Q1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42301.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
ABC-type spermidine/putrescine transport system, permease component I
L3_083_000G1_scaffold_135_21
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18763..19560
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5SB37_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42302.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Spermidine/putrescine-binding periplasmic protein
L3_083_000G1_scaffold_135_22
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19560..20639
DNA (1080bp) protein (360aa)
ABC transporter solute-binding protein n=1 Tax=Clostridium sp. CAG:253 RepID=R6LSY4_9CLOT
ABC transporter solute-binding protein {ECO:0000313|EMBL:CDB90533.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
Spermidine/putrescine-binding periplasmic protein
L3_083_000G1_scaffold_135_23
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20937..22043
DNA (1107bp) protein (369aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Clostridium sp. CAG:122 RepID=R5S5G9_9CLOT
L3_083_000G1_scaffold_135_24
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22240..22449
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RIC9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ40308.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
L3_083_000G1_scaffold_135_25
unknown

Not on your lists

comp(22605..22829)
DNA (225bp) protein (75aa)

This feature has no annotations

L3_083_000G1_scaffold_135_26
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23081..24379
DNA (1299bp) protein (433aa)
Beta-N-acetylhexosaminidase {ECO:0000256|SAAS:SAAS00114579}; EC=3.2.1.52 {ECO:0000256|SAAS:SAAS00114579};; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Glycosyl hydrolase family 3 N-terminal domain protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5S5H4_9CLOT
glycoside hydrolase
L3_083_000G1_scaffold_135_27
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24529..26022
DNA (1494bp) protein (498aa)
Amidophosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_01931, ECO:0000256|PIRNR:PIRNR000485}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Amidophosphoribosyltransferase n=1 Tax=Clostridium sp. CAG:122 RepID=R5RNT2_9CLOT
amidophosphoribosyltransferase
L3_083_000G1_scaffold_135_28
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26140..27594
DNA (1455bp) protein (485aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Clostridium sp. CAG:122 RepID=R5S010_9CLOT
L3_083_000G1_scaffold_135_29
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27664..28833
DNA (1170bp) protein (390aa)
Metal dependent phosphohydrolase n=1 Tax=Clostridium sp. CAG:122 RepID=R5RID7_9CLOT
Metal dependent phosphohydrolase {ECO:0000313|EMBL:CCZ40318.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
metal dependent phosphohydrolase
L3_083_000G1_scaffold_135_30
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29017..30300
DNA (1284bp) protein (428aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Clostridium sp. CAG:122 RepID=R5RGL0_9CLOT
Displaying items 1-30 of 100 in total

View Taxonomy