ggKbase home page

L3_083_000G1_scaffold_894

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_894_1
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2..853)
DNA (852bp) protein (284aa)
Endonuclease MutS2 {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084206}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00092, ECO:0000256|SAAS:SAAS00084246};; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Endonuclease MutS2 n=1 Tax=Clostridium sp. CAG:122 RepID=R5S6G7_9CLOT
MutS2 family protein
L3_083_000G1_scaffold_894_2
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1021..2301
DNA (1281bp) protein (427aa)
HtrA-like serine protease (With PDZ domain) n=1 Tax=Clostridium sp. CAG:122 RepID=R5RMQ1_9CLOT
HtrA-like serine protease (With PDZ domain) {ECO:0000313|EMBL:CCZ42505.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
HtrA-like serine protease (with PDZ domain)
L3_083_000G1_scaffold_894_3
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2431..4308)
DNA (1878bp) protein (626aa)
RelA/SpoT domain protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RVB0_9CLOT
RelA/SpoT domain protein {ECO:0000313|EMBL:CCZ42504.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_083_000G1_scaffold_894_4
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4618..5151
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RPG5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42503.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_083_000G1_scaffold_894_5
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5144..5575
DNA (432bp) protein (144aa)
Uncharacterized P-loop hydrolase UPF0079 n=1 Tax=Clostridium sp. CAG:122 RepID=R5SBU4_9CLOT
Uncharacterized P-loop hydrolase UPF0079 {ECO:0000313|EMBL:CCZ42502.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
conserved hypothetical nucleotide-binding protein
L3_083_000G1_scaffold_894_6
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5625..6335
DNA (711bp) protein (237aa)
Universal bacterial protein YeaZ n=1 Tax=Clostridium sp. CAG:122 RepID=R5S6F7_9CLOT
Universal bacterial protein YeaZ {ECO:0000313|EMBL:CCZ42501.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Inactive homolog of metal-dependent proteases, putative molecular chaperone
L3_083_000G1_scaffold_894_7
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6338..6817
DNA (480bp) protein (160aa)
ribosomal-protein-alanine acetyltransferase (EC:2.3.1.128)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RMP2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42500.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
L3_083_000G1_scaffold_894_8
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6889..7101
DNA (213bp) protein (71aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RV97_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42499.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_083_000G1_scaffold_894_9
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7203..8117
DNA (915bp) protein (305aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
RNAse Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=Clostridium sp. CAG:253 RepID=R6M0S0_9CLOT
L3_083_000G1_scaffold_894_10
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8295..8918
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RPG0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42498.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_083_000G1_scaffold_894_11
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8919..9941
DNA (1023bp) protein (341aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Clostridium sp. CAG:122 RepID=R5SBT5_9CLOT
O-sialoglycoprotein endopeptidase
L3_083_000G1_scaffold_894_12
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10284..11846
DNA (1563bp) protein (521aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Ribonuclease Y n=1 Tax=Clostridium sp. CAG:122 RepID=R5S6E6_9CLOT
RNA binding metal dependent phosphohydrolase
L3_083_000G1_scaffold_894_13
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11880..13397
DNA (1518bp) protein (506aa)
Putative metal-binding protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RML8_9CLOT
Putative metal-binding protein {ECO:0000313|EMBL:CCZ42495.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Vitamin B12 dependent methionine synthase activation subunit
L3_083_000G1_scaffold_894_14
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13414..14313
DNA (900bp) protein (300aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Clostridium sp. CAG:122 RepID=R5RV69_9CLOT
L3_083_000G1_scaffold_894_15
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14517..15053
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RPD5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42493.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Membrane proteins related to metalloendopeptidases
L3_083_000G1_scaffold_894_16
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15164..16009
DNA (846bp) protein (282aa)
RelA/SpoT domain protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5SBR0_9CLOT
RelA/SpoT domain protein {ECO:0000313|EMBL:CCZ42492.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
RelA/SpoT domain-containing protein
L3_083_000G1_scaffold_894_17
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16013..16576
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5S6A9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42491.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
L3_083_000G1_scaffold_894_18
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16593..17627
DNA (1035bp) protein (345aa)
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:122 RepID=R5RML3_9CLOT
Pseudouridine synthase {ECO:0000313|EMBL:CCZ42490.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
L3_083_000G1_scaffold_894_19
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17659..18195
DNA (537bp) protein (179aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Holliday junction resolvase RecU n=1 Tax=Clostridium sp. CAG:122 RepID=R5RV61_9CLOT
Penicillin-binding protein-related factor A, putative recombinase
L3_083_000G1_scaffold_894_20
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18204..18560
DNA (357bp) protein (119aa)
Hpt domain-containing protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5RPC8_9CLOT
Hpt domain-containing protein {ECO:0000313|EMBL:CCZ42488.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Hpt domain-containing protein
L3_083_000G1_scaffold_894_21
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18760..20922)
DNA (2163bp) protein (721aa)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Clostridium sp. CAG:253 RepID=R6MUH1_9CLOT
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDB89472.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
anaerobic ribonucleoside triphosphate reductase
L3_083_000G1_scaffold_894_22
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21008..21904)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5S6A3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42486.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_083_000G1_scaffold_894_23
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22555..23862
DNA (1308bp) protein (436aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Phosphomethylpyrimidine synthase n=1 Tax=Clostridium sp. CAG:122 RepID=R5RMK7_9CLOT
thiamine biosynthesis protein ThiC
L3_083_000G1_scaffold_894_24
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24012..24668)
DNA (657bp) protein (219aa)
HAD hydrolase family IA variant 3 n=1 Tax=Clostridium sp. CAG:122 RepID=R5RV55_9CLOT
HAD hydrolase family IA variant 3 {ECO:0000313|EMBL:CCZ42484.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
thiamine-phosphate pyrophosphorylase
L3_083_000G1_scaffold_894_25
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24688..25326)
DNA (639bp) protein (213aa)
Thiamine-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; Short=TP synthase {ECO:0000256|HAMAP-Rule:MF_00097};; Short=TPS {ECO:0000256|HAMAP-Rule:MF_00097};; EC=2.5.1.3 {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826};; Thiamine-phosphate pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00097, ECO:0000256|RuleBase:RU003826}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
Thiamine-phosphate synthase n=1 Tax=Clostridium sp. CAG:122 RepID=R5RPC1_9CLOT
thiamine-phosphate pyrophosphorylase
L3_083_000G1_scaffold_894_26
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25539..26276)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:122 RepID=R5SBP8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ42482.1}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
hypothetical protein
L3_083_000G1_scaffold_894_27
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


26612..27706
DNA (1095bp) protein (365aa)
Protein RecA n=1 Tax=Clostridium sp. CAG:122 RepID=R5S696_9CLOT
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
protein RecA
L3_083_000G1_scaffold_894_28
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27715..28215
DNA (501bp) protein (167aa)
Regulatory protein RecX n=1 Tax=Clostridium sp. CAG:122 RepID=R5RMK3_9CLOT
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
recombination regulator RecX
L3_083_000G1_scaffold_894_29
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28424..28837
DNA (414bp) protein (138aa)
30S ribosomal protein S12 n=2 Tax=environmental samples RepID=R5RV49_9CLOT
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
SSU ribosomal protein S12P
L3_083_000G1_scaffold_894_30
Clostridium sp. CAG:122, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28941..29462
DNA (522bp) protein (174aa)
30S ribosomal protein S7 n=2 Tax=environmental samples RepID=R5RPB4_9CLOT
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262773 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:122.;"
ribosomal protein S7, bacterial/organelle
Displaying items 1-30 of 41 in total

View Taxonomy