ggKbase home page

L3_083_000G1_scaffold_616

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_616_1
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(452..1276)
DNA (825bp) protein (275aa)
Uncharacterized protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA48_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EFV43049.2}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
L3_083_000G1_scaffold_616_2
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


1659..2696
DNA (1038bp) protein (346aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
Phenylalanine--tRNA ligase alpha subunit n=2 Tax=Bilophila RepID=E5YA49_BILWA
pheS; phenylalanyl-tRNA synthetase subunit alpha
L3_083_000G1_scaffold_616_3
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2879..5278
DNA (2400bp) protein (800aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA50_BILWA
pheT; phenylalanyl-tRNA synthetase subunit beta
L3_083_000G1_scaffold_616_4
Bilophila sp. 4_1_30, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5355..5705
DNA (351bp) protein (117aa)
Uncharacterized protein n=2 Tax=Bilophila RepID=E5YA51_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EGW43850.1}; TaxID=693988 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila sp. 4_1_30.;"
MerR family transcriptional regulator
L3_083_000G1_scaffold_616_5
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5712..6383
DNA (672bp) protein (224aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA52_BILWA
L3_083_000G1_scaffold_616_6
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6401..8395
DNA (1995bp) protein (665aa)
Transketolase {ECO:0000256|RuleBase:RU004996}; EC=2.2.1.1 {ECO:0000256|RuleBase:RU004996};; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
tkt; transketolase (EC:2.2.1.1)
Transketolase n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA53_BILWA
L3_083_000G1_scaffold_616_7
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8631..10013
DNA (1383bp) protein (461aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
tRNA (guanine-N(1)-)-methyltransferase n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA54_BILWA
trmD; tRNA-(guanine-N1)-methyltransferase
L3_083_000G1_scaffold_616_8
Bilophila sp. 4_1_30, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10190..10537
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=2 Tax=Bilophila RepID=E5YA55_BILWA
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=693988 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila sp. 4_1_30.;"
rplS; 50S ribosomal protein L19
L3_083_000G1_scaffold_616_9
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10671..11384
DNA (714bp) protein (238aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
Ribonuclease H (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA56_BILWA
L3_083_000G1_scaffold_616_10
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11381..11782
DNA (402bp) protein (134aa)
UPF0102 protein HMPREF0179_03075 n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA57_BILWA
UPF0102 protein HMPREF0179_03075 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
hypothetical protein
L3_083_000G1_scaffold_616_11
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11724..12557
DNA (834bp) protein (278aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA58_BILWA
uroporphyrin-III C/tetrapyrrole methyltransferase
L3_083_000G1_scaffold_616_12
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12561..13022
DNA (462bp) protein (154aa)
SsrA-binding protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA59_BILWA
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
smpB; SsrA-binding protein
L3_083_000G1_scaffold_616_13
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13867..16341)
DNA (2475bp) protein (825aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA60_BILWA
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EFV43061.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
diguanylate cyclase/phosphodiesterase
L3_083_000G1_scaffold_616_14
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16602..16772)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA61_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EFV43062.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
L3_083_000G1_scaffold_616_15
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17005..17454
DNA (450bp) protein (150aa)
Universal stress protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA62_BILWA
Universal stress protein {ECO:0000256|PIRNR:PIRNR006276}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
UspA domain-containing protein
L3_083_000G1_scaffold_616_16
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17516..18451)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA63_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EFV43064.2}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
Ion transport 2 domain-containing protein
L3_083_000G1_scaffold_616_17
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18651..21272
DNA (2622bp) protein (874aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA64_BILWA
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EFV43065.2}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
Two-component sensor histidine kinase
L3_083_000G1_scaffold_616_18
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21405..21824
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA65_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EFV43066.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
thioesterase superfamily protein
L3_083_000G1_scaffold_616_19
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21889..22362
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA66_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EFV43067.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
hypothetical protein
L3_083_000G1_scaffold_616_20
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22387..23319
DNA (933bp) protein (311aa)
Uncharacterized protein n=2 Tax=Bilophila RepID=E5YA67_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EFV43068.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
hypothetical protein
L3_083_000G1_scaffold_616_21
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23541..24212
DNA (672bp) protein (224aa)
Iron-sulfur cluster repair di-iron protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=E5YA68_BILWA
Iron-sulfur cluster repair di-iron protein {ECO:0000313|EMBL:EFV43069.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
iron-sulfur cluster repair di-iron protein
L3_083_000G1_scaffold_616_22
Desulfovibrio sp. TomC, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24671..25819
DNA (1149bp) protein (383aa)
hypothetical protein n=1 Tax=Desulfovibrio desulfuricans RepID=UPI0003B30D6C
Integrase {ECO:0000313|EMBL:KHK00446.1}; TaxID=1562888 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. TomC.;"
hypothetical protein
L3_083_000G1_scaffold_616_23
Desulfovibrio piger, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26011..26376
DNA (366bp) protein (122aa)
Site-specific recombinase, phage integrase family n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSY1_9DELT
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EEB33893.1}; TaxID=411464 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio piger ATCC 29098.;"
hypothetical protein
L3_083_000G1_scaffold_616_24
unknown

Not on your lists

26425..27381
DNA (957bp) protein (319aa)

This feature has no annotations

L3_083_000G1_scaffold_616_25
unknown

Not on your lists

27623..27931
DNA (309bp) protein (103aa)

This feature has no annotations

L3_083_000G1_scaffold_616_26
unknown

Not on your lists

27979..29460
DNA (1482bp) protein (494aa)

This feature has no annotations

L3_083_000G1_scaffold_616_27
BJP_IG2102_Desulfovibrionales_64_25, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30522..33329
DNA (2808bp) protein (936aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WST4_9BRAD
DNA/RNA helicase
Tax=BJP_IG2102_Desulfovibrionales_64_25
L3_083_000G1_scaffold_616_28
unknown

Not on your lists

34157..34384
DNA (228bp) protein (76aa)

This feature has no annotations

L3_083_000G1_scaffold_616_29
Bilophila wadsworthia, Bilophila, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34448..34972
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Bilophila wadsworthia 3_1_6 RepID=S2KT44_BILWA
Uncharacterized protein {ECO:0000313|EMBL:EPC05880.1}; TaxID=563192 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Bilophila.;" source="Bilophila wadsworthia 3_1_6.;"
transcriptional regulator, MucR family
L3_083_000G1_scaffold_616_30
Bacteroides ovatus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

35350..40179
DNA (4830bp) protein (1610aa)
Uncharacterized protein n=1 Tax=Bacteroides ovatus CL03T12C18 RepID=I9T2H1_BACOV
Uncharacterized protein {ECO:0000313|EMBL:EIY62768.1}; TaxID=997886 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides ovatus CL03T12C18.;"
helicase domain protein
Displaying items 1-30 of 41 in total

View Taxonomy