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L3_083_000G1_scaffold_431

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Displaying items 1-30 of 47 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_431_1
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..117
DNA (117bp) protein (39aa)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDC15523.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_083_000G1_scaffold_431_2
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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123..1481
DNA (1359bp) protein (453aa)
dipeptidase, putative (EC:3.5.1.18)
Dipeptidase, putative {ECO:0000313|EMBL:CBL27373.1}; EC=3.5.1.18 {ECO:0000313|EMBL:CBL27373.1};; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
Dipeptidase, putative n=1 Tax=Ruminococcus torques L2-14 RepID=D4M013_9FIRM
L3_083_000G1_scaffold_431_3
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1664..4060
DNA (2397bp) protein (799aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Beta-glucosidase-related glycosidases n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NWZ5_9FIRM
Beta-glucosidase-related glycosidases {ECO:0000313|EMBL:CDC16633.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_083_000G1_scaffold_431_4
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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4209..7229
DNA (3021bp) protein (1007aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IMI2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS23120.1}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
beta-glucosidase
L3_083_000G1_scaffold_431_5
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7417..8127
DNA (711bp) protein (237aa)
Response regulator of the LytR/AlgR family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PDK3_9FIRM
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CDC16631.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Response regulator of the LytR/AlgR family
L3_083_000G1_scaffold_431_6
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8124..9446
DNA (1323bp) protein (441aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16630.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
hypothetical protein
L3_083_000G1_scaffold_431_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9617..10177
DNA (561bp) protein (187aa)
GtrA-like protein n=4 Tax=Roseburia RepID=D4KKK5_9FIRM
GtrA-like protein.
GtrA-like protein {ECO:0000313|EMBL:CBL11142.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_083_000G1_scaffold_431_8
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10336..11481
DNA (1146bp) protein (382aa)
Predicted multitransmembrane protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NWZ0_9FIRM
Predicted multitransmembrane protein {ECO:0000313|EMBL:CDC16628.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Predicted multitransmembrane protein
L3_083_000G1_scaffold_431_9
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11475..12224
DNA (750bp) protein (250aa)
YibE/F-like protein n=2 Tax=Clostridiales RepID=D4M017_9FIRM
YibE/F-like protein.
YibE/F-like protein {ECO:0000313|EMBL:CDC16627.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
L3_083_000G1_scaffold_431_10
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12203..13534)
DNA (1332bp) protein (444aa)
MATE efflux family protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PDJ8_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDC16626.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
putative efflux protein, MATE family
L3_083_000G1_scaffold_431_11
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13524..13976)
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6NZM0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC16625.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
Transcriptional regulators
L3_083_000G1_scaffold_431_12
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14261..15844
DNA (1584bp) protein (528aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus torques L2-14 RepID=D4M018_9FIRM
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
Uncharacterized protein {ECO:0000313|EMBL:CBL27378.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_083_000G1_scaffold_431_13
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16014..16742)
DNA (729bp) protein (243aa)
Predicted transcriptional regulators n=2 Tax=Clostridiales RepID=R7GNW7_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI95968.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
Predicted transcriptional regulators
L3_083_000G1_scaffold_431_14
Clostridium sp. CAG:81, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16963..18363
DNA (1401bp) protein (467aa)
Transporter n=1 Tax=Clostridium sp. CAG:81 RepID=R5G1P6_9CLOT
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262842 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:81.;"
Na+-dependent transporters of the SNF family
L3_083_000G1_scaffold_431_15
Dorea formicigenerans CAG:28, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18405..18506)
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Dorea formicigenerans CAG:28 RepID=R6SPQ0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC59489.1}; TaxID=1263073 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea formicigenerans CAG:28.;"
L3_083_000G1_scaffold_431_16
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18641..19129
DNA (489bp) protein (163aa)
Ureidoglycolate hydrolase n=2 Tax=Clostridiales RepID=D4M020_9FIRM
Ureidoglycolate hydrolase.
Ureidoglycolate hydrolase {ECO:0000313|EMBL:CBL27380.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_083_000G1_scaffold_431_17
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19195..19890
DNA (696bp) protein (232aa)
Putative efflux protein, MATE family n=1 Tax=Ruminococcus torques L2-14 RepID=D4M021_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL27381.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_083_000G1_scaffold_431_18
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20050..21885
DNA (1836bp) protein (612aa)
Signal transduction histidine kinase n=1 Tax=Ruminococcus torques L2-14 RepID=D4M025_9FIRM
Signal transduction histidine kinase
Signal transduction histidine kinase {ECO:0000313|EMBL:CBL27385.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_083_000G1_scaffold_431_19
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21952..23712)
DNA (1761bp) protein (587aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6PAT6_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:CDC15656.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
diguanylate cyclase (GGDEF) domain
L3_083_000G1_scaffold_431_20
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24104..24739)
DNA (636bp) protein (212aa)
Twitching motility protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NGQ0_CLOSV
Twitching motility protein {ECO:0000313|EMBL:EDS06260.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
pilus retraction protein PilT
L3_083_000G1_scaffold_431_21
[Clostridium] scindens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24764..24979)
DNA (216bp) protein (72aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KPR7_9FIRM
Twitching motility protein {ECO:0000313|EMBL:EDS06260.1}; TaxID=411468 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] scindens ATCC 35704.;"
pilus retraction protein PilT
L3_083_000G1_scaffold_431_22
unknown

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comp(24995..25438)
DNA (444bp) protein (148aa)

This feature has no annotations

L3_083_000G1_scaffold_431_23
Coprococcus sp. ART55/1, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25630..25788)
DNA (159bp) protein (53aa)
Uncharacterized protein n=2 Tax=Coprococcus RepID=A8STG9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK82435.1}; TaxID=751585 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. ART55/1.;"
L3_083_000G1_scaffold_431_24
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25863..26072
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5DG45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75807.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
L3_083_000G1_scaffold_431_25
Dorea sp. CAG:105, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26084..26281
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Dorea sp. CAG:105 RepID=R5D6K2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX75808.1}; TaxID=1262872 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea sp. CAG:105.;"
L3_083_000G1_scaffold_431_26
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26520..27005
DNA (486bp) protein (162aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KPQ8_9FIRM
L3_083_000G1_scaffold_431_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27247..33606
DNA (6360bp) protein (2120aa)
1,2-A-L-fucosidase (EC:3.2.1.51)
LPXTG-motif cell wall anchor domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CQG3_9FIRM
LPXTG-motif cell wall anchor domain protein {ECO:0000313|EMBL:EDY32526.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_083_000G1_scaffold_431_28
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

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comp(33700..34551)
DNA (852bp) protein (284aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6ELH0_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CDB01443.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
AraC-type DNA-binding domain-containing proteins
L3_083_000G1_scaffold_431_29
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

34860..37013
DNA (2154bp) protein (718aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6WCK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC91942.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
conserved hypothetical protein TIGR02336
L3_083_000G1_scaffold_431_30
Firmicutes bacterium CAG:227, Firmicutes, Bacteria

Not on your lists

37093..38400
DNA (1308bp) protein (436aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Firmicutes bacterium CAG:227 RepID=R6V4I7_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDC91940.1}; TaxID=1263010 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:227.;"
extracellular solute-binding protein
Displaying items 1-30 of 47 in total

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