ggKbase home page

L3_083_000G1_scaffold_2060

Search features with annotation key words

Displaying items 1-30 of 90 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_000G1_scaffold_2060_1
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3..662
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8P2_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFB36935.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
hypothetical protein
L3_083_000G1_scaffold_2060_2
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(784..2550)
DNA (1767bp) protein (589aa)
Uncharacterized protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8P3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFB36936.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
pectin methylesterase
L3_083_000G1_scaffold_2060_3
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2675..5296)
DNA (2622bp) protein (874aa)
Glycosyl hydrolase, family 88 {ECO:0000313|EMBL:EFB36937.1}; EC=3.2.1.- {ECO:0000313|EMBL:EFB36937.1};; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
Glycosyl hydrolase, family 88 n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8P4_9BACT
endopolygalacturonase
L3_083_000G1_scaffold_2060_4
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5572..6168
DNA (597bp) protein (199aa)
Sigma-70 region 2 n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8P6_9BACT
Sigma-70 region 2 {ECO:0000313|EMBL:EFB36939.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
Sigma-70 region 2
L3_083_000G1_scaffold_2060_5
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6165..6818)
DNA (654bp) protein (218aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
rpe; ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase n=1 Tax=Prevotella copri CAG:164 RepID=R6BMB8_9BACT
L3_083_000G1_scaffold_2060_6
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6835..6963)
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Prevotella copri CAG:164 RepID=R6CJ24_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDA65297.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
L3_083_000G1_scaffold_2060_7
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7544..7666
DNA (123bp) protein (41aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
Anthranilate phosphoribosyltransferase n=1 Tax=Prevotella copri CAG:164 RepID=R6C1E2_9BACT
L3_083_000G1_scaffold_2060_8
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7644..8510
DNA (867bp) protein (289aa)
Anthranilate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083107}; EC=2.4.2.18 {ECO:0000256|HAMAP-Rule:MF_00211, ECO:0000256|SAAS:SAAS00083113};; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
trpD; anthranilate phosphoribosyltransferase (EC:2.4.2.18)
Anthranilate phosphoribosyltransferase n=1 Tax=Prevotella copri CAG:164 RepID=R6C1E2_9BACT
L3_083_000G1_scaffold_2060_9
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

8657..9469
DNA (813bp) protein (271aa)
Indole-3-glycerol phosphate synthase {ECO:0000256|SAAS:SAAS00046689}; EC=4.1.1.48 {ECO:0000256|SAAS:SAAS00046705};; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
Indole-3-glycerol phosphate synthase n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8Q1_9BACT
Indole-3-glycerol phosphate synthase
L3_083_000G1_scaffold_2060_10
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

9496..10095
DNA (600bp) protein (200aa)
N-(5'-phosphoribosyl)anthranilate isomerase {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123216}; Short=PRAI {ECO:0000256|HAMAP-Rule:MF_00135};; EC=5.3.1.24 {ECO:0000256|HAMAP-Rule:MF_00135, ECO:0000256|SAAS:SAAS00123176};; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
N-(5'-phosphoribosyl)anthranilate isomerase n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8Q2_9BACT
N-(5'-phosphoribosyl) anthranilate isomerase
L3_083_000G1_scaffold_2060_11
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10117..10893
DNA (777bp) protein (259aa)
Tryptophan synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00031177}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00131, ECO:0000256|SAAS:SAAS00108586};; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain n=1 Tax=Prevotella copri CAG:164 RepID=R6CJX0_9BACT
L3_083_000G1_scaffold_2060_12
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10971..12170
DNA (1200bp) protein (400aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
trpB; tryptophan synthase subunit beta (EC:4.2.1.20)
Tryptophan synthase beta chain n=1 Tax=Prevotella copri CAG:164 RepID=R6C290_9BACT
L3_083_000G1_scaffold_2060_13
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12193..13632
DNA (1440bp) protein (480aa)
Chorismate binding enzyme n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8Q5_9BACT
Chorismate binding enzyme {ECO:0000313|EMBL:EFB36948.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
anthranilate/para-aminobenzoate synthase component I
L3_083_000G1_scaffold_2060_14
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

13657..14223
DNA (567bp) protein (189aa)
Anthranilate synthase component II n=1 Tax=Prevotella copri CAG:164 RepID=R6BX49_9BACT
Anthranilate synthase component II {ECO:0000313|EMBL:CDA65564.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase
L3_083_000G1_scaffold_2060_15
unknown

Not on your lists

14223..14348
DNA (126bp) protein (42aa)

This feature has no annotations

L3_083_000G1_scaffold_2060_16
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(14456..15436)
DNA (981bp) protein (327aa)
glkA; glucokinase (EC:2.7.1.2)
ROK family protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8Q7_9BACT
ROK family protein {ECO:0000313|EMBL:EFB36950.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
L3_083_000G1_scaffold_2060_17
unknown

Not on your lists

comp(15822..16409)
DNA (588bp) protein (196aa)

This feature has no annotations

L3_083_000G1_scaffold_2060_18
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

16507..17061
DNA (555bp) protein (185aa)
Uncharacterized protein n=3 Tax=root RepID=D1P8Q9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDA65561.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
hypothetical protein
L3_083_000G1_scaffold_2060_19
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17120..18706
DNA (1587bp) protein (529aa)
Peptide chain release factor 3 n=1 Tax=Prevotella copri CAG:164 RepID=R6BQQ7_9BACT
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
peptide chain release factor 3
L3_083_000G1_scaffold_2060_20
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

18721..20535
DNA (1815bp) protein (605aa)
Putative chloride channel n=2 Tax=root RepID=R6BX46_9BACT
Putative chloride channel {ECO:0000313|EMBL:CDA65559.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
hypothetical protein
L3_083_000G1_scaffold_2060_21
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20616..21371
DNA (756bp) protein (252aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase n=2 Tax=root RepID=D1P8V1_9BACT
L3_083_000G1_scaffold_2060_22
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21461..21661
DNA (201bp) protein (67aa)
Methionyl-tRNA formyltransferase {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00043681}; EC=2.1.2.9 {ECO:0000256|HAMAP-Rule:MF_00182, ECO:0000256|SAAS:SAAS00150580};; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
Methionyl-tRNA formyltransferase n=1 Tax=Prevotella copri CAG:164 RepID=R6BN54_9BACT
methionyl-tRNA formyltransferase
L3_083_000G1_scaffold_2060_23
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

21699..22271
DNA (573bp) protein (191aa)
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8V2_9BACT
Sua5/YciO/YrdC/YwlC family protein {ECO:0000313|EMBL:EFB36956.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
Sua5/YciO/YrdC/YwlC family protein
L3_083_000G1_scaffold_2060_24
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22733..23128)
DNA (396bp) protein (132aa)
Preprotein translocase, SecG subunit n=2 Tax=Prevotella RepID=D1P8V3_9BACT
Preprotein translocase SecG subunit {ECO:0000313|EMBL:CDA65556.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
protein translocase, SecG subunit
L3_083_000G1_scaffold_2060_25
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23165..23944)
DNA (780bp) protein (260aa)
Uncharacterized protein n=2 Tax=Prevotella RepID=R6BQQ3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDA65555.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
hypothetical protein
L3_083_000G1_scaffold_2060_26
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24052..24573)
DNA (522bp) protein (174aa)
Uncharacterized protein n=2 Tax=Prevotella RepID=D1P8V5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CDA65554.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
hypothetical protein
L3_083_000G1_scaffold_2060_27
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24570..25898)
DNA (1329bp) protein (443aa)
Sigma-54-dependent transcriptional regulator n=1 Tax=Prevotella copri CAG:164 RepID=R6BN51_9BACT
Sigma-54-dependent transcriptional regulator {ECO:0000313|EMBL:CDA65553.1}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
sigma-54 interaction domain protein
L3_083_000G1_scaffold_2060_28
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26061..27158)
DNA (1098bp) protein (366aa)
Pyridoxal phosphate biosynthetic protein PdxA n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8V7_9BACT
Pyridoxal phosphate biosynthetic protein PdxA {ECO:0000313|EMBL:EFB36961.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
pyridoxal phosphate biosynthesis protein
L3_083_000G1_scaffold_2060_29
Prevotella copri, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27167..28102)
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1P8V8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFB36962.1}; TaxID=537011 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella copri DSM 18205.;"
hypothetical protein
L3_083_000G1_scaffold_2060_30
Prevotella copri CAG:164, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28120..29187)
DNA (1068bp) protein (356aa)
Probable dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=1263102 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella; environmental samples.;" source="Prevotella copri CAG:164.;"
rlmN; 23S rRNA m2A2503 methyltransferase (EC:2.1.1.-)
Probable dual-specificity RNA methyltransferase RlmN n=1 Tax=Prevotella copri CAG:164 RepID=R6BQQ1_9BACT
Displaying items 1-30 of 90 in total

View Taxonomy