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L3_083_059G1_scaffold_105

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Displaying items 1-30 of 89 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_105_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2..1237)
DNA (1236bp) protein (412aa)
Nuclease sbcCD subunit C n=1 Tax=Escherichia coli KTE66 RepID=L3PC06_ECOLX
Nuclease sbcCD subunit C {ECO:0000313|EMBL:KEL71217.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
sbcC; exonuclease subunit SbcC
L3_083_059G1_scaffold_105_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1234..2436)
DNA (1203bp) protein (401aa)
Nuclease sbcCD subunit D n=1 Tax=Escherichia coli KTE147 RepID=L4J615_ECOLX
Nuclease sbcCD subunit D {ECO:0000313|EMBL:KEL71216.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
sbcD; exonuclease subunit SbcD
L3_083_059G1_scaffold_105_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2626..3315
DNA (690bp) protein (230aa)
Phosphate regulon transcriptional regulatory protein PhoB n=1320 Tax=Enterobacteriaceae RepID=PHOB_ECO57
winged helix family two component transcriptional regulator PhoB
Phosphate regulon transcriptional regulatory protein PhoB {ECO:0000313|EMBL:EFK21982.1}; TaxID=749527 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain MS 21-1).;"
L3_083_059G1_scaffold_105_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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3373..4668
DNA (1296bp) protein (432aa)
phoR; phosphate regulon sensor protein (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1280986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 36 (4-5675286).;"
Phosphate regulon sensor protein phoR n=421 Tax=Enterobacteriaceae RepID=E2QGE4_ECOLX
L3_083_059G1_scaffold_105_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5075..6394
DNA (1320bp) protein (440aa)
Branched-chain amino acid transport system 2 carrier protein n=885 Tax=Enterobacteriaceae RepID=BRNQ_ECO57
brnQ; branched chain amino acid transport system II carrier protein
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:END55772.1}; TaxID=1125638 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MP020980.1.;"
L3_083_059G1_scaffold_105_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6470..7843
DNA (1374bp) protein (458aa)
Proline-specific permease ProY n=3 Tax=Escherichia coli RepID=L4J732_ECOLX
Proline-specific permease ProY {ECO:0000313|EMBL:ETJ23928.1}; TaxID=1403943 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DORA_A_5_14_21.;"
proY; putative proline-specific permease
L3_083_059G1_scaffold_105_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7999..9816
DNA (1818bp) protein (606aa)
malZ; maltodextrin glucosidase (EC:3.2.1.20)
Maltodextrin glucosidase n=2 Tax=Escherichia coli RepID=L4J618_ECOLX
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:KEJ80182.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
L3_083_059G1_scaffold_105_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10004..11449
DNA (1446bp) protein (482aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE147 RepID=L4J7D7_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KEL71209.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
hypothetical protein
L3_083_059G1_scaffold_105_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(11470..12105)
DNA (636bp) protein (212aa)
Acyl carrier protein phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01950}; Short=ACP phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01950};; EC=3.1.4.14 {ECO:0000256|HAMAP-Rule:MF_01950};; TaxID=656444 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TA280.;"
yajB; acyl carrier protein phosphodiesterase (EC:3.1.4.14)
Acyl carrier protein phosphodiesterase n=36 Tax=Escherichia coli RepID=N2CF19_ECOLX
L3_083_059G1_scaffold_105_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12347..13417
DNA (1071bp) protein (357aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=1446560 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O121:H19 str. 2010C-3609.;"
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=240 Tax=Enterobacteriaceae RepID=QUEA_ECO55
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase
L3_083_059G1_scaffold_105_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13473..14600
DNA (1128bp) protein (376aa)
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1281241 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3323-1.;"
Queuine tRNA-ribosyltransferase n=1342 Tax=Enterobacteriaceae RepID=TGT_ECO24
L3_083_059G1_scaffold_105_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14623..14955
DNA (333bp) protein (111aa)
UPF0092 membrane protein YajC n=1434 Tax=Enterobacteriaceae RepID=YAJC_ECO57
yajC; preprotein translocase subunit YajC
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EZK26215.1}; TaxID=1444065 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-011-08_S1_C2.;"
L3_083_059G1_scaffold_105_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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15016..16830
DNA (1815bp) protein (605aa)
Protein translocase subunit SecD n=961 Tax=Bacteria RepID=SECD_ECO57
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1182680 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE73.;"
secD; protein-export membrane protein SecD
L3_083_059G1_scaffold_105_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16841..17812
DNA (972bp) protein (324aa)
Protein translocase subunit SecF n=1280 Tax=Enterobacteriaceae RepID=SECF_ECO57
secF; preprotein translocase subunit SecF
Protein-export membrane protein SecF {ECO:0000256|HAMAP-Rule:MF_01464}; TaxID=1181739 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE193.;"
L3_083_059G1_scaffold_105_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17941..18288
DNA (348bp) protein (116aa)
Uncharacterized protein YajD n=1304 Tax=Enterobacteriaceae RepID=YAJD_ECO57
hypothetical protein
HNH endonuclease family protein {ECO:0000313|EMBL:KDY62336.1}; TaxID=1444155 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-460-02_S3_C2.;"
L3_083_059G1_scaffold_105_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18326..19210)
DNA (885bp) protein (295aa)
Nucleoside-specific channel-forming protein tsx n=966 Tax=Enterobacteriaceae RepID=TSX_ECO57
tsx; nucleoside-specific channel-forming protein
Nucleoside-specific channel-forming protein tsx {ECO:0000313|EMBL:EGI47418.1}; TaxID=656408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H591.;"
L3_083_059G1_scaffold_105_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19509..20048)
DNA (540bp) protein (180aa)
Lipoprotein n=2 Tax=Escherichia coli RepID=L4J625_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KEJ80192.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
yajI; hypothetical protein
L3_083_059G1_scaffold_105_18
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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20199..20648
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR n=957 Tax=Enterobacteriaceae RepID=NRDR_ECO24
nrdR; transcriptional regulator NrdR
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1401327 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae WRSd3.;"
L3_083_059G1_scaffold_105_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20652..21755
DNA (1104bp) protein (368aa)
ribD; bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase (EC:3.5.4.26)
Riboflavin biosynthesis protein RibD n=3 Tax=Escherichia coli RepID=L3PDX2_ECOLX
Riboflavin biosynthesis protein RibD {ECO:0000256|PIRNR:PIRNR006769}; TaxID=1182673 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE66.;"
L3_083_059G1_scaffold_105_20
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21844..22314
DNA (471bp) protein (157aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=766155 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1485-80.;"
6,7-dimethyl-8-ribityllumazine synthase n=1503 Tax=Bacteria RepID=RISB_CITK8
ribH; 6,7-dimethyl-8-ribityllumazine synthase
L3_083_059G1_scaffold_105_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22334..22753
DNA (420bp) protein (140aa)
N utilization substance protein B homolog n=1421 Tax=Enterobacteriaceae RepID=NUSB_ECO24
nusB; transcription antitermination protein
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=1268997 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908555.;"
L3_083_059G1_scaffold_105_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22831..23808
DNA (978bp) protein (326aa)
Thiamine-monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128}; Short=TMP kinase {ECO:0000256|HAMAP-Rule:MF_02128};; Short=Thiamine-phosphate kinase {ECO:0000256|HAMAP-Rule:MF_02128};; EC=2.7.4.16 {ECO:0000256|HAMAP-Rule:MF_02128};; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
thiamine monophosphate kinase (EC:2.7.4.16)
Thiamine-monophosphate kinase n=2 Tax=Escherichia coli RepID=H1FM10_ECOLX
L3_083_059G1_scaffold_105_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23786..24301
DNA (516bp) protein (172aa)
Phosphatidylglycerophosphatase A {ECO:0000256|PIRNR:PIRNR006162}; EC=3.1.3.27 {ECO:0000256|PIRNR:PIRNR006162};; Phosphatidylglycerolphosphate phosphatase A {ECO:0000256|PIRNR:PIRNR006162}; TaxID=1268977 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 113302.;"
Phosphatidylglycerophosphatase A n=677 Tax=Proteobacteria RepID=PGPA_ECOLI
phosphatidylglycerophosphatase A
L3_083_059G1_scaffold_105_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24478..25635)
DNA (1158bp) protein (386aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=L4J831_ECOLX
Pentapeptide repeat protein {ECO:0000313|EMBL:EIH13746.1}; TaxID=869672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 97.0259.;"
hypothetical protein
L3_083_059G1_scaffold_105_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25851..26048)
DNA (198bp) protein (66aa)
Uncharacterized protein n=9 Tax=Escherichia coli RepID=L4CIA6_ECOLX
hypothetical protein
Non-LEE-encoded type III secreted effector {ECO:0000313|EMBL:EGP26233.1}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
L3_083_059G1_scaffold_105_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(26280..27254)
DNA (975bp) protein (325aa)
Uncharacterized oxidoreductase YajO n=218 Tax=Enterobacteriaceae RepID=YAJO_ECOLI
aldo/keto reductase
Aldo/keto reductase family protein {ECO:0000313|EMBL:KDY22788.1}; TaxID=1444235 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-316-03_S4_C2.;"
L3_083_059G1_scaffold_105_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27309..29171)
DNA (1863bp) protein (621aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=656444 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TA280.;"
dxs; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=13 Tax=Escherichia coli RepID=F4UZ13_ECOLX
L3_083_059G1_scaffold_105_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29196..30095)
DNA (900bp) protein (300aa)
ispA; geranyltranstransferase (EC:2.5.1.10)
Farnesyl diphosphate synthase n=411 Tax=Enterobacteriaceae RepID=ISPA_ECOLI
Polyprenyl synthetase {ECO:0000313|EMBL:EII19689.1}; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
L3_083_059G1_scaffold_105_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30095..30337)
DNA (243bp) protein (81aa)
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=1444266 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-427-07_S4_C3.;"
Exodeoxyribonuclease 7 small subunit n=1386 Tax=Enterobacteriaceae RepID=EX7S_ECO24
xseB; exonuclease VII small subunit
L3_083_059G1_scaffold_105_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30543..31991
DNA (1449bp) protein (483aa)
tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00022963}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1269003 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908658.;"
tRNA sulfurtransferase n=229 Tax=Escherichia RepID=THII_ECOBW
thiamine biosynthesis/tRNA modification protein ThiI
Displaying items 1-30 of 89 in total

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