ggKbase home page

L3_083_059G1_scaffold_270

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_270_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

595..1320
DNA (726bp) protein (242aa)
Uncharacterized protein YjjQ n=795 Tax=Enterobacteriaceae RepID=YJJQ_ECO57
yjjQ; putative DNA-binding transcriptional regulator
DNA-binding transcriptional regulator {ECO:0000313|EMBL:EHW26598.1}; TaxID=868172 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli DEC8C.;"
L3_083_059G1_scaffold_270_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1278..1955
DNA (678bp) protein (226aa)
Transcriptional regulator, LuxR family n=487 Tax=Enterobacteriaceae RepID=A7ZVQ7_ECO24
DNA-binding transcriptional activator BglJ
Bacterial regulatory s, luxR family protein {ECO:0000313|EMBL:KEN84180.1}; TaxID=1444123 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-222-05_S3_C1.;"
L3_083_059G1_scaffold_270_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1993..2781)
DNA (789bp) protein (263aa)
Siderophore-iron reductase FhuF {ECO:0000313|EMBL:KEJ70518.1}; EC=1.-.-.- {ECO:0000313|EMBL:KEJ70518.1};; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
Ferric iron reductase fhuF n=1 Tax=Escherichia coli KTE147 RepID=L4JBP5_ECOLX
fhuF; ferric iron reductase
L3_083_059G1_scaffold_270_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2922..3158
DNA (237bp) protein (79aa)
Uncharacterized protein n=86 Tax=Escherichia coli RepID=B7NH37_ECOLU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQX82003.1}; TaxID=1281213 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli UMEA 3200-1.;"
L3_083_059G1_scaffold_270_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3820..4851)
DNA (1032bp) protein (344aa)
Ribosomal RNA small subunit methyltransferase C {ECO:0000256|HAMAP-Rule:MF_01862, ECO:0000256|SAAS:SAAS00048249}; EC=2.1.1.172 {ECO:0000256|HAMAP-Rule:MF_01862, ECO:0000256|SAAS:SAAS00048248};; 16S rRNA m2G1207 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01862}; rRNA (guanine-N(2)-)-methyltransferase RsmC {ECO:0000256|HAMAP-Rule:MF_01862}; TaxID=1417796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli LAU-EC10.;"
Ribosomal RNA small subunit methyltransferase C n=20 Tax=Escherichia RepID=B3HEG9_ECOLX
rsmC; 16S ribosomal RNA m2G1207 methyltransferase
L3_083_059G1_scaffold_270_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4954..5367
DNA (414bp) protein (138aa)
DNA polymerase III subunit psi n=8 Tax=Escherichia RepID=B3HEH0_ECOLX
DNA polymerase III subunit psi {ECO:0000256|PIRNR:PIRNR029225}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
DNA polymerase III psi subunit
L3_083_059G1_scaffold_270_7
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5336..5782
DNA (447bp) protein (149aa)
rimI; Ribosomal-protein-S18p-alanine acetyltransferase (EC:2.3.1.-)
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EIQ22095.1}; EC=2.3.1.128 {ECO:0000313|EMBL:EIQ22095.1};; TaxID=766138 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii 965-58.;"
Ribosomal-protein-alanine acetyltransferase n=943 Tax=Enterobacteriaceae RepID=RIMI_ECO57
L3_083_059G1_scaffold_270_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5797..6474
DNA (678bp) protein (226aa)
yjjG; nucleotidase (EC:3.1.3.5)
5'-nucleotidase yjjG n=516 Tax=Escherichia RepID=E2QLD3_ECOLX
HAD hydrolase family {ECO:0000313|EMBL:ESA83545.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_083_059G1_scaffold_270_9
Shigella dysenteriae, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6565..8154
DNA (1590bp) protein (530aa)
Peptide chain release factor 3 n=638 Tax=Enterobacteriaceae RepID=RF3_ECO27
prfC; Peptide chain release factor 3
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=754093 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella dysenteriae 1617.;"
L3_083_059G1_scaffold_270_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8547..9152
DNA (606bp) protein (202aa)
Osmotically-inducible protein Y n=946 Tax=Enterobacteriaceae RepID=OSMY_ECOL6
osmY; hypothetical protein
Phospholipid-binding domain protein {ECO:0000313|EMBL:ESA83543.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_083_059G1_scaffold_270_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9279..9440
DNA (162bp) protein (54aa)
UPF0391 membrane protein YtjA n=1448 Tax=Enterobacteriaceae RepID=YTJA_ECO24
hypothetical protein
UPF0391 membrane protein YtjA {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=550672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B088.;"
L3_083_059G1_scaffold_270_12
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9562..10635
DNA (1074bp) protein (358aa)
Phospholipase, patatin family n=389 Tax=Enterobacteriaceae RepID=A7ZVR9_ECO24
phospholipase, patatin family
Uncharacterized protein {ECO:0000313|EMBL:AJA29519.1}; TaxID=1330457 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:H7 str. SS52.;"
L3_083_059G1_scaffold_270_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10632..11411
DNA (780bp) protein (260aa)
TatD family hydrolase n=3 Tax=Escherichia coli RepID=L3YP80_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KEJ70528.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
yjjV; putative deoxyribonuclease YjjV
L3_083_059G1_scaffold_270_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11445..12149)
DNA (705bp) protein (235aa)
pflA_2; Pyruvate formate-lyase 1-activating enzyme (EC:1.97.1.4)
YjjW family glycine radical enzyme activase n=1 Tax=Escherichia coli KTE147 RepID=L4J7X4_ECOLX
Radical SAM superfamily protein {ECO:0000313|EMBL:KEL67127.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
L3_083_059G1_scaffold_270_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12280..13830)
DNA (1551bp) protein (517aa)
YjjI family glycine radical enzyme n=1 Tax=Escherichia coli KTE147 RepID=L4J9B6_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KEJ70530.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
yjjI; hypothetical protein
L3_083_059G1_scaffold_270_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14088..14867
DNA (780bp) protein (260aa)
Deoxyribose-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00592, ECO:0000256|SAAS:SAAS00058202}; Short=DERA {ECO:0000256|HAMAP-Rule:MF_00592};; EC=4.1.2.4 {ECO:0000256|HAMAP-Rule:MF_00592, ECO:0000256|SAAS:SAAS00058202};; 2-deoxy-D-ribose 5-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00592}; Phosphodeoxyriboaldolase {ECO:0000256|HAMAP-Rule:MF_00592}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
deoC; deoxyribose-phosphate aldolase (EC:4.1.2.4)
Deoxyribose-phosphate aldolase n=2 Tax=Escherichia coli RepID=L4J9Y1_ECOLX
L3_083_059G1_scaffold_270_17
Shigella boydii, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14945..16267
DNA (1323bp) protein (441aa)
deoA; thymidine phosphorylase (EC:2.4.2.4)
Thymidine phosphorylase {ECO:0000256|HAMAP-Rule:MF_01628, ECO:0000256|SAAS:SAAS00031984}; EC=2.4.2.4 {ECO:0000256|HAMAP-Rule:MF_01628, ECO:0000256|SAAS:SAAS00031985};; TdRPase {ECO:0000256|HAMAP-Rule:MF_01628}; TaxID=932676 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella boydii ATCC 9905.;"
Thymidine phosphorylase n=913 Tax=Enterobacteriaceae RepID=TYPH_ECO24
L3_083_059G1_scaffold_270_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16319..17542
DNA (1224bp) protein (408aa)
phosphopentomutase (EC:5.4.2.7)
Phosphopentomutase {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00010015}; EC=5.4.2.7 {ECO:0000256|HAMAP-Rule:MF_00740, ECO:0000256|SAAS:SAAS00009998};; Phosphodeoxyribomutase {ECO:0000256|HAMAP-Rule:MF_00740}; TaxID=679207 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 107-1.;"
Phosphopentomutase n=1128 Tax=Enterobacteriaceae RepID=DEOB_ECO24
L3_083_059G1_scaffold_270_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17622..18341
DNA (720bp) protein (240aa)
Purine nucleoside phosphorylase DeoD-type {ECO:0000256|HAMAP-Rule:MF_01627}; Short=PNP {ECO:0000256|HAMAP-Rule:MF_01627};; EC=2.4.2.1 {ECO:0000256|HAMAP-Rule:MF_01627};; TaxID=1268985 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907710.;"
Purine nucleoside phosphorylase DeoD-type n=1 Tax=Escherichia coli 907446 RepID=V0SL00_ECOLX
purine-nucleoside phosphorylase
L3_083_059G1_scaffold_270_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18502..18765)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE147 RepID=L4J9C0_ECOLX
Helix-turn-helix family protein {ECO:0000313|EMBL:KEJ70536.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
putative transcriptional regulator
L3_083_059G1_scaffold_270_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18797..19813)
DNA (1017bp) protein (339aa)
Lipoate-protein ligase A {ECO:0000256|HAMAP-Rule:MF_01602, ECO:0000256|SAAS:SAAS00214764}; EC=2.7.7.63 {ECO:0000256|HAMAP-Rule:MF_01602, ECO:0000256|SAAS:SAAS00026637};; Lipoate--protein ligase {ECO:0000256|HAMAP-Rule:MF_01602}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
lplA; lipoate-protein ligase A (EC:6.3.2.-)
Lipoate-protein ligase A n=1 Tax=Escherichia coli KTE147 RepID=L4J9Y4_ECOLX
L3_083_059G1_scaffold_270_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19841..20485)
DNA (645bp) protein (215aa)
Protein smp n=1 Tax=Escherichia coli BIDMC 19C RepID=U7CBJ5_ECOLX
hypothetical protein
Protein smp {ECO:0000313|EMBL:EOW04921.1}; TaxID=1182698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE98.;"
L3_083_059G1_scaffold_270_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20591..21559
DNA (969bp) protein (323aa)
serB; phosphoserine phosphatase (EC:3.1.3.3)
Phosphoserine phosphatase {ECO:0000313|EMBL:EDU62720.1}; EC=3.1.3.3 {ECO:0000313|EMBL:EDU62720.1};; TaxID=344610 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 53638.;"
3-phosphoserine phosphatase n=234 Tax=Escherichia RepID=J7RCY4_ECOLX
L3_083_059G1_scaffold_270_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21608..22990
DNA (1383bp) protein (461aa)
DNA repair protein radA n=1131 Tax=Enterobacteriaceae RepID=C3SE38_ECOLX
DNA repair protein RadA
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=869669 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1.2741.;"
L3_083_059G1_scaffold_270_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23011..24243
DNA (1233bp) protein (411aa)
Transcriptional regulator NadR {ECO:0000313|EMBL:EKJ10464.1}; EC=2.7.7.1 {ECO:0000313|EMBL:EKJ10464.1};; TaxID=1005550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli EC1865.;"
Transcriptional regulator nadR n=332 Tax=Escherichia RepID=E2QLF0_ECOLX
nadR; nicotinamide-nucleotide adenylyltransferase
L3_083_059G1_scaffold_270_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24277..24480
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE147 RepID=L4J9Z0_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:KEL67140.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
regulatory protein
L3_083_059G1_scaffold_270_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24484..25032)
DNA (549bp) protein (183aa)
Uncharacterized protein n=2 Tax=Escherichia coli RepID=L3PG05_ECOLX
Uncharacterized protein {ECO:0000313|EMBL:ELE46227.1}; TaxID=1182673 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE66.;"
GCN5-related N-acetyltransferase
L3_083_059G1_scaffold_270_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25444..25656)
DNA (213bp) protein (71aa)
Uncharacterized protein n=33 Tax=Escherichia coli RepID=D7ZIP8_ECOLX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDW84129.1}; TaxID=1444081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S1_C2.;"
L3_083_059G1_scaffold_270_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25814..26230)
DNA (417bp) protein (139aa)
XoxI n=2 Tax=Escherichia coli RepID=F7N539_ECOLX
XoxI {ECO:0000313|EMBL:EGP22256.1}; TaxID=1001989 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli PCN033.;"
hypothetical protein
L3_083_059G1_scaffold_270_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26256..27053)
DNA (798bp) protein (266aa)
3-oxoacyl-[acyl-carrier protein] reductase (EC:1.1.1.100)
Short-chain dehydrogenase/reductase SDR n=6 Tax=Escherichia coli RepID=F7N540_ECOLX
Short chain dehydrogenase family protein {ECO:0000313|EMBL:KEJ70548.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
Displaying items 1-30 of 55 in total

View Taxonomy