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L3_083_059G1_scaffold_280

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_280_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(158..1468)
DNA (1311bp) protein (437aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
tRNA methylthiotransferase YqeV n=2 Tax=Clostridium symbiosum RepID=U2C7H5_CLOSY
tRNA methylthiotransferase YqeV {ECO:0000313|EMBL:ERI80475.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L3_083_059G1_scaffold_280_2
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1607..1837
DNA (231bp) protein (77aa)
Uncharacterized protein n=4 Tax=Clostridium RepID=E9SNE8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95289.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
PTS HPr component phosphorylation site.
L3_083_059G1_scaffold_280_3
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1929..3107)
DNA (1179bp) protein (393aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Probable tRNA sulfurtransferase n=3 Tax=Clostridium RepID=E9SNE9_CLOSY
thiazole biosynthesis/tRNA modification protein ThiI
L3_083_059G1_scaffold_280_4
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3153..4307)
DNA (1155bp) protein (385aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Aminotransferase, class V n=3 Tax=Clostridium RepID=E9SNF0_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07298.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L3_083_059G1_scaffold_280_5
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4337..5074)
DNA (738bp) protein (246aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=2 Tax=Clostridium RepID=E7GJ19_CLOSY
L3_083_059G1_scaffold_280_6
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5122..6078)
DNA (957bp) protein (319aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=2 Tax=Clostridium RepID=E9SNF2_CLOSY
L3_083_059G1_scaffold_280_7
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6420..7181)
DNA (762bp) protein (254aa)
Membrane family protein n=4 Tax=Clostridium RepID=E7GJ21_CLOSY
Membrane family protein {ECO:0000313|EMBL:EGA95190.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Predicted permeases
L3_083_059G1_scaffold_280_8
unknown

Not on your lists

comp(7296..7529)
DNA (234bp) protein (78aa)

This feature has no annotations

L3_083_059G1_scaffold_280_9
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7477..8661)
DNA (1185bp) protein (395aa)
putative oxygen-independent coproporphyrinogen III oxidase (EC:1.3.99.22)
Putative oxygen-independent coproporphyrinogen III oxidase n=2 Tax=Clostridium symbiosum RepID=U2DG89_CLOSY
Putative oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:ERI80482.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L3_083_059G1_scaffold_280_10
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8700..10514)
DNA (1815bp) protein (605aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Elongation factor 4 n=4 Tax=Clostridium RepID=E7GJ23_CLOSY
GTP-binding protein LepA
L3_083_059G1_scaffold_280_11
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11917..12960)
DNA (1044bp) protein (348aa)
NAD dependent epimerase/dehydratase family protein n=2 Tax=Clostridium RepID=E9SP54_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF07861.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase
L3_083_059G1_scaffold_280_12
Eggerthia catenaformis, Eggerthia, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12978..13688)
DNA (711bp) protein (237aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=999415 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Eggerthia.;" source="Eggerthia catenaformis OT 569 = DSM 20559.;"
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0003054096
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
L3_083_059G1_scaffold_280_13
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13758..14948)
DNA (1191bp) protein (397aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G550_CLOPA
Uncharacterized protein {ECO:0000313|EMBL:ETD71659.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
coenzyme F420-reducing hydrogenase subunit beta
L3_083_059G1_scaffold_280_14
Selenomonas sp. FOBRC6, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(14964..15890)
DNA (927bp) protein (309aa)
yvgN; Glyoxal reductase (EC:1.1.1.-)
Putative glyoxal reductase n=1 Tax=Selenomonas sp. FOBRC6 RepID=J4XNY0_9FIRM
Putative glyoxal reductase {ECO:0000313|EMBL:EJO22461.1}; TaxID=936572 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas sp. FOBRC6.;"
L3_083_059G1_scaffold_280_15
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15924..16637)
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Clostridium pasteurianum NRRL B-598 RepID=V8G550_CLOPA
Uncharacterized protein {ECO:0000313|EMBL:ETD71659.1}; TaxID=1428454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum NRRL B-598.;"
hypothetical protein
L3_083_059G1_scaffold_280_16
unknown

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comp(16665..17264)
DNA (600bp) protein (200aa)

This feature has no annotations

L3_083_059G1_scaffold_280_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17324..18832)
DNA (1509bp) protein (503aa)
Resolvase, N-terminal domain protein n=3 Tax=Clostridiales RepID=A8SHA4_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDP20505.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_083_059G1_scaffold_280_18
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(18922..19098)
DNA (177bp) protein (59aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=T4S2A1_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERT29192.1}; TaxID=1391469 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis BM4654.;"
L3_083_059G1_scaffold_280_19
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19232..19501)
DNA (270bp) protein (90aa)
Uncharacterized protein n=2 Tax=root RepID=U7SDE7_ENTFL
Uncharacterized protein {ECO:0000313|EMBL:ERT29191.1}; TaxID=1391469 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis BM4654.;"
hypothetical protein
L3_083_059G1_scaffold_280_20
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(19943..20365)
DNA (423bp) protein (141aa)
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog n=4 Tax=Firmicutes RepID=D4MKZ5_9FIRM
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
Uncharacterized protein {ECO:0000313|EMBL:ERT29189.1}; TaxID=1391469 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis BM4654.;"
L3_083_059G1_scaffold_280_21
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20816..21286)
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76751.2}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_083_059G1_scaffold_280_22
Blautia sp. KLE 1732, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21283..22098)
DNA (816bp) protein (272aa)
Uncharacterized protein n=1 Tax=Blautia sp. KLE 1732 RepID=U2E7J5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI90287.1}; TaxID=1226324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia sp. KLE 1732.;"
hypothetical protein
L3_083_059G1_scaffold_280_23
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22111..22905)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDK4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76753.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_083_059G1_scaffold_280_24
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22898..23824)
DNA (927bp) protein (309aa)
ABC-type multidrug transport system, ATPase component n=8 Tax=Clostridiales RepID=D4LWS4_9FIRM
ABC-type multidrug transport system, ATPase component
Lantibiotic ABC transporter ATP-binding protein {ECO:0000313|EMBL:AEN97212.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_083_059G1_scaffold_280_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23960..24877)
DNA (918bp) protein (306aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
Signal transduction histidine kinase n=4 Tax=Clostridiales RepID=D4L1Y7_9FIRM
Signal transduction histidine kinase
L3_083_059G1_scaffold_280_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24883..25575)
DNA (693bp) protein (231aa)
Transcriptional regulatory family protein n=2 Tax=Clostridiales RepID=T4E494_CLODI
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBL13626.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_083_059G1_scaffold_280_27
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25568..25756)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XG97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ45932.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_083_059G1_scaffold_280_28
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25904..26269
DNA (366bp) protein (122aa)
Helix-turn-helix n=3 Tax=Firmicutes RepID=D4ML05_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL34438.1}; TaxID=717961 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum V10Sc8a.;"
L3_083_059G1_scaffold_280_29
Clostridium sp. L2-50, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26439..27854)
DNA (1416bp) protein (472aa)
Relaxase/mobilization nuclease domain protein n=1 Tax=Clostridium sp. L2-50 RepID=A7VCT6_9CLOT
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EDO58683.1}; TaxID=411489 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. L2-50.;"
hypothetical protein
L3_083_059G1_scaffold_280_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27934..28227)
DNA (294bp) protein (98aa)
Putative membrane protein n=1 Tax=Clostridium difficile P28 RepID=T4P506_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQJ62865.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
Displaying items 1-30 of 56 in total

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