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L3_083_059G1_scaffold_366

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_366_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3..89)
DNA (87bp) protein (29aa)
Cysteine/O-acetylserine efflux protein n=27 Tax=Escherichia coli RepID=L2XJP1_ECOLX
lysine exporter protein LysE/YggA
Cysteine/O-acetylserine efflux protein {ECO:0000313|EMBL:EQN25614.1}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
L3_083_059G1_scaffold_366_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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192..1073
DNA (882bp) protein (294aa)
Transcriptional regulator n=2 Tax=Escherichia coli RepID=L4JN90_ECOLX
Bacterial regulatory helix-turn-helix , lysR family protein {ECO:0000313|EMBL:KEL67348.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
LysR family transcriptional regulator
L3_083_059G1_scaffold_366_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1106..2440)
DNA (1335bp) protein (445aa)
ATP-dependent RNA helicase SrmB {ECO:0000256|HAMAP-Rule:MF_00967}; EC=3.6.4.13 {ECO:0000256|HAMAP-Rule:MF_00967};; TaxID=749533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 84-1.;"
ATP-dependent RNA helicase SrmB n=1254 Tax=Enterobacteriaceae RepID=C3SZ18_ECOLX
srmB; ATP-dependent RNA helicase SrmB
L3_083_059G1_scaffold_366_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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2572..3309
DNA (738bp) protein (246aa)
tRNA1(Val) (adenine(37)-N6)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016413}; EC=2.1.1.223 {ECO:0000256|HAMAP-Rule:MF_01872, ECO:0000256|SAAS:SAAS00016405};; tRNA m6A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01872}; TaxID=1433131 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS1.;"
yfiC; tRNA m[6]A37 methyltransferase (EC:2.1.1.55)
tRNA (Adenine-N6)-methyltransferase n=21 Tax=Escherichia coli RepID=V8KG26_ECOLX
L3_083_059G1_scaffold_366_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3294..4916)
DNA (1623bp) protein (541aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
L-aspartate oxidase n=1 Tax=Escherichia coli KTE147 RepID=L4JLZ3_ECOLX
nadB; L-aspartate oxidase
L3_083_059G1_scaffold_366_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5324..5899
DNA (576bp) protein (192aa)
ECF RNA polymerase sigma-E factor n=1376 Tax=Enterobacteriaceae RepID=RPOE_ECO57
rpoE; RNA polymerase, sigma 24 (sigma E) factor
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1182677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli KTE70.;"
L3_083_059G1_scaffold_366_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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5932..6582
DNA (651bp) protein (217aa)
Anti-sigma-E factor RseA n=938 Tax=Enterobacteriaceae RepID=RSEA_ECOL6
rseA; anti-RNA polymerase sigma factor SigE
Anti-sigma-E factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Regulator of SigE {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E anti-sigma factor RseA {ECO:0000256|PIRNR:PIRNR016938}; Sigma-E factor negative regulatory protein {ECO:0000256|PIRNR:PIRNR016938}; TaxID=1446599 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O146:H21 str. 2010C-3325.;"
L3_083_059G1_scaffold_366_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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6582..7538
DNA (957bp) protein (319aa)
Sigma-E factor regulatory protein RseB n=23 Tax=Escherichia coli RepID=F4V4T5_ECOLX
Sigma-E factor regulatory protein rseB {ECO:0000313|EMBL:KEJ74066.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
rseB; periplasmic negative regulator of sigmaE
L3_083_059G1_scaffold_366_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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7535..8014
DNA (480bp) protein (160aa)
Sigma-E factor regulatory protein rseC n=110 Tax=Escherichia coli RepID=E2QQ30_ECOLX
SoxR reducing system protein RseC
Sigma-E factor regulatory protein rseC {ECO:0000313|EMBL:EZJ38254.1}; TaxID=1444258 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-005-03_S4_C3.;"
L3_083_059G1_scaffold_366_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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8212..10011
DNA (1800bp) protein (600aa)
Elongation factor 4 {ECO:0000256|HAMAP-Rule:MF_00071}; Short=EF-4 {ECO:0000256|HAMAP-Rule:MF_00071};; EC=3.6.5.n1 {ECO:0000256|HAMAP-Rule:MF_00071};; Ribosomal back-translocase LepA {ECO:0000256|HAMAP-Rule:MF_00071}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
Elongation factor 4 n=1 Tax=Escherichia coli KTE147 RepID=L4JLY8_ECOLX
GTP-binding protein LepA
L3_083_059G1_scaffold_366_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10027..11001
DNA (975bp) protein (325aa)
lepB; signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU003993}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU003993};; TaxID=656429 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli TA007.;"
Signal peptidase I n=1188 Tax=Enterobacteriaceae RepID=C3SZ57_ECOLX
L3_083_059G1_scaffold_366_12
Escherichia sp. KTE114, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11274..11954
DNA (681bp) protein (227aa)
rnc; ribonuclease III (EC:3.1.26.3)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=1169321 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia sp. KTE114.;"
Ribonuclease 3 n=1213 Tax=Enterobacteriaceae RepID=RNC_ECO24
L3_083_059G1_scaffold_366_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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11951..12856
DNA (906bp) protein (302aa)
GTPase Era n=1 Tax=Escherichia coli KTE147 RepID=L4JM32_ECOLX
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
era; GTP-binding protein
L3_083_059G1_scaffold_366_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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12868..13596
DNA (729bp) protein (243aa)
DNA repair protein RecO n=768 Tax=Bacteria RepID=RECO_ECO45
DNA repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=679205 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli MS 124-1.;"
L3_083_059G1_scaffold_366_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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13608..14339
DNA (732bp) protein (244aa)
Pyridoxine 5'-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088558}; Short=PNP synthase {ECO:0000256|HAMAP-Rule:MF_00279};; EC=2.6.99.2 {ECO:0000256|HAMAP-Rule:MF_00279, ECO:0000256|SAAS:SAAS00088588};; TaxID=1116116 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli BCE030_MS-09.;"
Pyridoxine 5'-phosphate synthase n=92 Tax=Escherichia RepID=E3PGV4_ECOH1
pyridoxine 5'-phosphate synthase
L3_083_059G1_scaffold_366_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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14339..14719
DNA (381bp) protein (127aa)
acpS; 4'-phosphopantetheinyl transferase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=869687 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4.0967.;"
Holo-[acyl-carrier-protein] synthase n=455 Tax=Enterobacteriaceae RepID=ACPS_ECO24
L3_083_059G1_scaffold_366_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15416..15676)
DNA (261bp) protein (87aa)
Uncharacterized ferredoxin-like protein YfhL n=620 Tax=Enterobacteriaceae RepID=YFHL_ECOLI
yfhL; putative 4Fe-4S cluster-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EMX20448.1}; TaxID=1116066 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.1.;"
L3_083_059G1_scaffold_366_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15732..16580)
DNA (849bp) protein (283aa)
Transcriptional regulator n=1 Tax=Escherichia coli KTE147 RepID=L4JM27_ECOLX
Helix-turn-helix domain, rpiR family protein {ECO:0000313|EMBL:KEL67332.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
yfhH; DNA-binding transcriptional regulator
L3_083_059G1_scaffold_366_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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16789..17424
DNA (636bp) protein (212aa)
HAD hydrolase, family IF n=1 Tax=Escherichia coli KTE147 RepID=L4JL45_ECOLX
Haloacid dehalogenase-like hydrolase family protein {ECO:0000313|EMBL:KEL67331.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
hypothetical protein
L3_083_059G1_scaffold_366_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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17482..17985
DNA (504bp) protein (168aa)
tRNA-specific adenosine deaminase {ECO:0000256|HAMAP-Rule:MF_00972}; EC=3.5.4.33 {ECO:0000256|HAMAP-Rule:MF_00972};; TaxID=1116070 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.7.;"
tRNA-specific adenosine deaminase n=444 Tax=Enterobacteriaceae RepID=TADA_ECOLI
CMP/dCMP deaminase zinc-binding protein
L3_083_059G1_scaffold_366_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(17982..19538)
DNA (1557bp) protein (519aa)
Membrane-bound lytic murein transglycosylase F {ECO:0000256|HAMAP-Rule:MF_02016, ECO:0000256|SAAS:SAAS00176609}; EC=4.2.2.n1 {ECO:0000256|HAMAP-Rule:MF_02016, ECO:0000256|SAAS:SAAS00166192};; Murein lyase F {ECO:0000256|HAMAP-Rule:MF_02016}; Flags: Precursor;; TaxID=1090926 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli W26.;"
Membrane-bound lytic murein transglycosylase F n=541 Tax=Enterobacteriaceae RepID=MLTF_ECODH
lytic transglycosylase
L3_083_059G1_scaffold_366_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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19796..23683
DNA (3888bp) protein (1296aa)
Phosphoribosylformylglycinamidine synthase {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00419};; Short=FGAMS {ECO:0000256|HAMAP-Rule:MF_00419};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00419, ECO:0000256|SAAS:SAAS00064474};; Formylglycinamide ribonucleotide amidotransferase {ECO:0000256|HAMAP-Rule:MF_00419}; TaxID=1280961 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 6 (3-8296502).;"
purL; phosphoribosylformylglycinamidine synthase (EC:6.3.5.3)
Phosphoribosylformylglycinamidine synthase n=11 Tax=Escherichia coli RepID=F4UB27_ECOLX
L3_083_059G1_scaffold_366_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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24285..25667
DNA (1383bp) protein (461aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=11 Tax=Escherichia coli RepID=D7ZII3_ECOLX
glrK; putative 2-component sensor protein
L3_083_059G1_scaffold_366_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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25832..26545
DNA (714bp) protein (238aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE147 RepID=L4JL39_ECOLX
YfhG lipofamily protein {ECO:0000313|EMBL:KEL67325.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
hypothetical protein
L3_083_059G1_scaffold_366_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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26535..27869
DNA (1335bp) protein (445aa)
Two-component response regulator n=531 Tax=Escherichia RepID=D2NLA9_ECOS5
putative DNA-binding response regulator in two-component system
AAA domain family protein {ECO:0000313|EMBL:EMV57208.1}; TaxID=1116032 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2871950.;"
L3_083_059G1_scaffold_366_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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27930..28268
DNA (339bp) protein (113aa)
Nitrogen regulatory protein P-II 1 n=1938 Tax=Enterobacteriaceae RepID=GLNB_ECO57
nitrogen regulatory protein P-II 1
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:ENA06885.1}; TaxID=1116047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0299917.1.;"
L3_083_059G1_scaffold_366_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28313..29503)
DNA (1191bp) protein (397aa)
hmp; nitric oxide dioxygenase (EC:1.14.12.17)
Flavohemoprotein n=1 Tax=Escherichia coli KTE147 RepID=L4JN68_ECOLX
Flavohemoprotein {ECO:0000256|HAMAP-Rule:MF_01252}; Flavohemoglobin {ECO:0000256|HAMAP-Rule:MF_01252}; Hemoglobin-like protein {ECO:0000256|HAMAP-Rule:MF_01252}; Nitric oxide dioxygenase {ECO:0000256|HAMAP-Rule:MF_01252}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
L3_083_059G1_scaffold_366_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29831..31084
DNA (1254bp) protein (418aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=550677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B354.;"
Serine hydroxymethyltransferase n=99 Tax=Escherichia coli RepID=GLYA_ECOLU
L3_083_059G1_scaffold_366_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31282..32475)
DNA (1194bp) protein (398aa)
Transcriptional regulator n=10 Tax=Escherichia coli RepID=L4C411_ECOLX
ROK family protein {ECO:0000313|EMBL:EIH12559.1}; TaxID=869672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 97.0259.;"
yphH; DNA-binding transcriptional regulator
L3_083_059G1_scaffold_366_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32593..35874
DNA (3282bp) protein (1094aa)
Uncharacterized protein n=1 Tax=Escherichia coli KTE147 RepID=L4JLW8_ECOLX
Tetratricopeptide repeat family protein {ECO:0000313|EMBL:KEJ74041.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
TPR repeat-containing protein
Displaying items 1-30 of 35 in total

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