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L3_083_059G1_scaffold_459

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_459_1
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

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comp(699..1124)
DNA (426bp) protein (142aa)
RecX-like protein n=4 Tax=Bifidobacterium RepID=E3EMZ7_BIFBS
recX; RecX-like protein
RecX-like protein {ECO:0000313|EMBL:CDB24342.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_059G1_scaffold_459_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(1316..2506)
DNA (1191bp) protein (397aa)
Protein RecA n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HBL3_BIFBI
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
recA; recombinase A
L3_083_059G1_scaffold_459_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2776..3009)
DNA (234bp) protein (78aa)
Uncharacterized protein n=6 Tax=Bifidobacterium bifidum RepID=I3WIY0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERI83608.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_059G1_scaffold_459_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3181..3693)
DNA (513bp) protein (171aa)
Transcriptional regulator n=4 Tax=Bifidobacterium bifidum RepID=E3EN00_BIFBS
Transcriptional regulator {ECO:0000313|EMBL:EKF15869.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
transcriptional regulator
L3_083_059G1_scaffold_459_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3754..4299)
DNA (546bp) protein (182aa)
Competence-damage protein cinA n=5 Tax=Bifidobacterium RepID=E3EN01_BIFBS
cinA; putative nucleotide-utilizing enzyme
Competence-damage protein cinA {ECO:0000313|EMBL:ADO53435.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_059G1_scaffold_459_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4371..5042)
DNA (672bp) protein (224aa)
pgsA; CDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyl transferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:EFR50681.1}; EC=2.7.8.5 {ECO:0000313|EMBL:EFR50681.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
CDP-diacylglycerol--glycerol-3-phosphate3-phosphatidyl transferase n=4 Tax=Bifidobacterium RepID=I3WIY3_BIFBI
L3_083_059G1_scaffold_459_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5169..8018)
DNA (2850bp) protein (950aa)
Cell division protein FtsK n=2 Tax=Bifidobacterium bifidum RepID=E3EN03_BIFBS
ftsK; cell division protein FtsK
Cell division protein FtsK {ECO:0000313|EMBL:ADO53437.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_059G1_scaffold_459_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8300..9025
DNA (726bp) protein (242aa)
Fic Cell filamentation protein n=2 Tax=Bifidobacterium bifidum RepID=E4NXT0_BIFBP
fic2; Fic family protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53438.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_059G1_scaffold_459_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9090..10205)
DNA (1116bp) protein (372aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
tRNA dimethylallyltransferase n=2 Tax=Bifidobacterium RepID=R6GT85_9BIFI
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
L3_083_059G1_scaffold_459_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10242..11696)
DNA (1455bp) protein (485aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=2 Tax=Bifidobacterium bifidum RepID=U2CGE2_BIFBI
hypothetical protein
L3_083_059G1_scaffold_459_11
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11852..12514
DNA (663bp) protein (221aa)
RelA2 GTP pyrophosphokinase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GS09_9BIFI
RelA/SpoT domain containing protein
RelA2 GTP pyrophosphokinase {ECO:0000313|EMBL:CDB24479.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_059G1_scaffold_459_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12635..13627)
DNA (993bp) protein (331aa)
Drug/metabolite exporter family transporter n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MF84_BIFBI
Drug/metabolite exporter family transporter {ECO:0000313|EMBL:EKF15917.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
drug/metabolite exporter family transporter
L3_083_059G1_scaffold_459_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13808..14641)
DNA (834bp) protein (278aa)
Integral membrane protein n=8 Tax=Bifidobacterium RepID=E3EN09_BIFBS
ybhL; inner membrane protein
Membrane spanning protein {ECO:0000313|EMBL:KFI43299.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_083_059G1_scaffold_459_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14744..15562)
DNA (819bp) protein (273aa)
Integral membrane protein n=5 Tax=Bifidobacterium RepID=I3WIZ2_BIFBI
integral membrane protein
Uncharacterized protein {ECO:0000313|EMBL:CDB24487.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_059G1_scaffold_459_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15728..17167
DNA (1440bp) protein (480aa)
Two component system histidine kinase n=3 Tax=Bifidobacterium RepID=E4NXT7_BIFBP
two component system histidine kinase
Two component system histidine kinase {ECO:0000313|EMBL:EKF15913.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_083_059G1_scaffold_459_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17164..17835
DNA (672bp) protein (224aa)
Transcriptional regulatory protein n=6 Tax=Bifidobacterium RepID=E4NXT8_BIFBP
response regulator of two-component system
Response regulator of two-component system {ECO:0000313|EMBL:AFL04857.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_059G1_scaffold_459_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17922..20027
DNA (2106bp) protein (702aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WIZ5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:AFL04858.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
hypothetical protein
L3_083_059G1_scaffold_459_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20271..21854)
DNA (1584bp) protein (528aa)
Guanylate kinase {ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|SAAS:SAAS00036702};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
gmk; guanylate kinase (EC:2.7.4.8)
Orotidine 5'-phosphate decarboxylase n=6 Tax=Bifidobacterium RepID=E3EN14_BIFBS
L3_083_059G1_scaffold_459_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21873..25253)
DNA (3381bp) protein (1127aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
carB; carbamoyl-phosphate synthase large subunit (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=5 Tax=Bifidobacterium RepID=I3WIZ7_BIFBI
L3_083_059G1_scaffold_459_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25246..26463)
DNA (1218bp) protein (406aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
carA; carbamoyl-phosphate synthase small chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase small chain n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I943_BIFBI
L3_083_059G1_scaffold_459_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26550..27221)
DNA (672bp) protein (224aa)
N utilization substance protein B homolog n=2 Tax=Bifidobacterium RepID=R6HEN6_9BIFI
N utilization substance protein B homolog {ECO:0000256|HAMAP-Rule:MF_00073, ECO:0000256|SAAS:SAAS00057003}; Short=Protein NusB {ECO:0000256|HAMAP-Rule:MF_00073};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
nusB; n utilization substance protein B NusB
L3_083_059G1_scaffold_459_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27243..27806)
DNA (564bp) protein (188aa)
Elongation factor P n=7 Tax=Bifidobacterium RepID=E3EN18_BIFBS
efp; translation elongation factor P
Elongation factor P {ECO:0000256|HAMAP-Rule:MF_00141}; Short=EF-P {ECO:0000256|HAMAP-Rule:MF_00141};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_059G1_scaffold_459_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27823..27969
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BZI5_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83629.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_059G1_scaffold_459_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28087..28284)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HEP2_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB24522.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
hypothetical protein
L3_083_059G1_scaffold_459_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28998..30140
DNA (1143bp) protein (381aa)
Transporter, major facilitator family protein n=2 Tax=Bifidobacterium bifidum RepID=E4VAU8_BIFBI
Putative transport protein {ECO:0000313|EMBL:BAQ98486.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_083_059G1_scaffold_459_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30141..32630)
DNA (2490bp) protein (830aa)
LPXTG-motif protein cell wall anchor domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DPW7_BIFBI
LPXTG-motif protein cell wall anchor domain protein {ECO:0000313|EMBL:ERI83632.1}; Lipoprotein {ECO:0000313|EMBL:BAQ98487.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
putative lipo protein
L3_083_059G1_scaffold_459_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32876..34075)
DNA (1200bp) protein (400aa)
tuf; protein translation rlongation factor Tu (EC:2.7.7.4)
Elongation factor Tu n=6 Tax=Bifidobacterium bifidum RepID=E3EN22_BIFBS
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_083_059G1_scaffold_459_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34249..36306)
DNA (2058bp) protein (686aa)
Elongation factor G n=8 Tax=Bifidobacterium RepID=E3EN23_BIFBS
fusA; translation elongation factor G
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_059G1_scaffold_459_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(36334..36804)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=9 Tax=Bacteria RepID=E3EN24_BIFBS
rpsG; 30S ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_059G1_scaffold_459_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(36810..37181)
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=43 Tax=Bifidobacteriaceae RepID=RS12_BIFLO
30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Displaying 30 items

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