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L3_083_059G1_scaffold_474

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_474_1
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

209..889
DNA (681bp) protein (227aa)
TIGR00266 family protein n=4 Tax=Clostridium RepID=E9SK69_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95985.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
conserved hypothetical protein TIGR00266
L3_083_059G1_scaffold_474_2
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1049..1444
DNA (396bp) protein (132aa)
Transcriptional regulator, Fur family n=4 Tax=Clostridium RepID=E9SK68_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05474.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Fe2+/Zn2+ uptake regulation proteins
L3_083_059G1_scaffold_474_3
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1596..2141
DNA (546bp) protein (182aa)
Rubredoxin n=4 Tax=Clostridium RepID=E9SK67_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05475.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Rubrerythrin
L3_083_059G1_scaffold_474_4
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2290..3159)
DNA (870bp) protein (290aa)
methenyltetrahydrofolate cyclohydrolase/5,10-methylenetetrahydrofolate dehydrogenase (NADP+) (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GGT2_CLOSY
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L3_083_059G1_scaffold_474_5
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3211..4071)
DNA (861bp) protein (287aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=3 Tax=Clostridium RepID=E7GGT3_CLOSY
3-methyl-2-oxobutanoate hydroxymethyltransferase
L3_083_059G1_scaffold_474_6
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4153..5103)
DNA (951bp) protein (317aa)
4-phosphoerythronate dehydrogenase n=2 Tax=Clostridium symbiosum RepID=E9SK64_CLOSY
Phosphoglycerate dehydrogenase {ECO:0000313|EMBL:EGA95990.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Phosphoglycerate dehydrogenase and related dehydrogenases
L3_083_059G1_scaffold_474_7
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5245..7224)
DNA (1980bp) protein (660aa)
TRAP transporter, 4TM/12TM fusion protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BUB8_CLOSY
TRAP transporter, 4TM/12TM fusion protein {ECO:0000313|EMBL:ERI75845.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
TRAP type transporter protein
L3_083_059G1_scaffold_474_8
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7256..8326)
DNA (1071bp) protein (357aa)
TRAP transporter solute receptor, TAXI family n=3 Tax=Clostridium symbiosum RepID=E9SK62_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95992.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
TAXI family TRAP transporter solute receptor
L3_083_059G1_scaffold_474_9
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8540..9454)
DNA (915bp) protein (305aa)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GGT7_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95993.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
HTH-type transcriptional regulator YwbI
L3_083_059G1_scaffold_474_10
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9517..10482)
DNA (966bp) protein (322aa)
phosphoglycerate dehydrogenase (EC:1.1.1.95)
Putative uncharacterized protein n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GGT8_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95994.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L3_083_059G1_scaffold_474_11
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10504..11184)
DNA (681bp) protein (227aa)
Transcriptional regulator, GntR family n=2 Tax=Clostridium symbiosum RepID=E9SK59_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95995.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L3_083_059G1_scaffold_474_12
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11291..12562)
DNA (1272bp) protein (424aa)
TRAP transporter, DctM subunit n=3 Tax=Clostridium RepID=E9SK58_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05484.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_083_059G1_scaffold_474_13
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12559..13083)
DNA (525bp) protein (175aa)
TRAP transporter, DctQ-like membrane protein n=3 Tax=Clostridium RepID=U2D8L1_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EGA95997.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
hypothetical protein
L3_083_059G1_scaffold_474_14
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13109..14191)
DNA (1083bp) protein (361aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FDM0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05486.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_083_059G1_scaffold_474_15
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14248..14649)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BVK6_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI75853.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L3_083_059G1_scaffold_474_16
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14651..15859)
DNA (1209bp) protein (403aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=E9SK54_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05488.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
hypothetical protein
L3_083_059G1_scaffold_474_17
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15919..17148)
DNA (1230bp) protein (410aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FDM3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGA96001.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
Uncharacterized conserved protein (DUF2088).
L3_083_059G1_scaffold_474_18
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17480..18664)
DNA (1185bp) protein (395aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
LL-diaminopimelate aminotransferase apoenzyme (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GGU6_CLOSY
L3_083_059G1_scaffold_474_19
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18684..20288)
DNA (1605bp) protein (535aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
CTP synthase n=2 Tax=Clostridium symbiosum RepID=E7GGU7_CLOSY
CTP synthase
L3_083_059G1_scaffold_474_20
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20360..23653)
DNA (3294bp) protein (1098aa)
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
carB; Carbamoyl-phosphate synthase large chain (EC:6.3.5.5)
Carbamoyl-phosphate synthase large chain n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FDM7_9CLOT
L3_083_059G1_scaffold_474_21
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23644..24828)
DNA (1185bp) protein (395aa)
Carbamoyl-phosphate synthase small chain {ECO:0000256|HAMAP-Rule:MF_01209}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01209};; Carbamoyl-phosphate synthetase glutamine chain {ECO:0000256|HAMAP-Rule:MF_01209}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
Carbamoyl-phosphate synthase small chain n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BCJ7_CLOSY
carbamoyl-phosphate synthase small subunit
L3_083_059G1_scaffold_474_22
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25044..26402)
DNA (1359bp) protein (453aa)
MATE efflux family protein n=2 Tax=Clostridium symbiosum RepID=E9SK48_CLOSY
MATE efflux family protein {ECO:0000313|EMBL:ERI75860.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
putative efflux protein, MATE family
L3_083_059G1_scaffold_474_23
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26547..27005
DNA (459bp) protein (153aa)
Transcriptional regulator, AsnC family n=3 Tax=Clostridium RepID=E9SK47_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05496.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
transcriptional regulator, AsnC family
L3_083_059G1_scaffold_474_24
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27026..27586
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2D2Z3_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI75862.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L3_083_059G1_scaffold_474_25
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27720..28619)
DNA (900bp) protein (300aa)
ureidoglycolate lyase (EC:4.3.2.3)
FAH family protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2BVL6_CLOSY
FAH family protein {ECO:0000313|EMBL:ERI75863.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
L3_083_059G1_scaffold_474_26
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28722..29726)
DNA (1005bp) protein (335aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140, ECO:0000256|SAAS:SAAS00009965};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=4 Tax=Clostridium RepID=E7GGV5_CLOSY
L3_083_059G1_scaffold_474_27
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30463..30957
DNA (495bp) protein (165aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
quorum-sensing autoinducer 2 (AI-2), LuxS (EC:4.4.1.21)
S-ribosylhomocysteine lyase n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2C6G3_CLOSY
L3_083_059G1_scaffold_474_28
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31162..32490)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2DDV3_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:ERI79622.1}; TaxID=411472 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum ATCC 14940.;"
hypothetical protein
L3_083_059G1_scaffold_474_29
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32474..33325)
DNA (852bp) protein (284aa)
Site-specific DNA-methyltransferase (adenine-specific) {ECO:0000256|RuleBase:RU361257}; EC=2.1.1.72 {ECO:0000256|RuleBase:RU361257};; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
DNA adenine methylase n=3 Tax=Clostridium RepID=U2DIX0_CLOSY
modification methylase LlaDCHIA
Displaying 29 items

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