ggKbase home page

L3_083_059G1_scaffold_482

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_482_1
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

57..170
DNA (114bp) protein (38aa)
Uncharacterized protein n=3 Tax=Erysipelotrichaceae RepID=H1AWY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO24321.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L3_083_059G1_scaffold_482_2
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


658..951
DNA (294bp) protein (98aa)
30S ribosomal protein S6 n=7 Tax=Firmicutes RepID=E4LXE2_9CLOT
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
ribosomal protein S6
L3_083_059G1_scaffold_482_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

971..1447
DNA (477bp) protein (159aa)
Single-stranded DNA-binding protein n=7 Tax=Firmicutes RepID=E4LXE1_9CLOT
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
single-strand binding protein
L3_083_059G1_scaffold_482_4
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


1468..1698
DNA (231bp) protein (77aa)
30S ribosomal protein S18 n=7 Tax=Firmicutes RepID=E4LXE0_9CLOT
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
SSU ribosomal protein S18P
L3_083_059G1_scaffold_482_5
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1813..2736
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LXD9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR36506.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_083_059G1_scaffold_482_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2714..4711
DNA (1998bp) protein (666aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1AWY4_9FIRM
DHHA1 domain protein {ECO:0000313|EMBL:EQJ61923.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain
L3_083_059G1_scaffold_482_7
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


4689..5135
DNA (447bp) protein (149aa)
50S ribosomal protein L9 n=7 Tax=Firmicutes RepID=E4LXD7_9CLOT
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
rplI; 50S ribosomal protein L9
L3_083_059G1_scaffold_482_8
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

5144..6490
DNA (1347bp) protein (449aa)
primary replicative DNA helicase (EC:3.6.1.-)
Replicative DNA helicase n=3 Tax=Firmicutes RepID=E4LXD6_9CLOT
Replicative DNA helicase {ECO:0000313|EMBL:EGX70175.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
L3_083_059G1_scaffold_482_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6618..7364
DNA (747bp) protein (249aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1AWY1_9FIRM
Metallo-beta-lactamase superfamily protein {ECO:0000313|EMBL:EQJ61920.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
metallo-beta-lactamase family protein
L3_083_059G1_scaffold_482_10
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

7361..8449
DNA (1089bp) protein (363aa)
Uncharacterized protein n=4 Tax=Erysipelotrichaceae RepID=G1VWM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX70177.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
serine protease
L3_083_059G1_scaffold_482_11
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8468..8650
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BD47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO24331.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
metallophosphoesterase
L3_083_059G1_scaffold_482_12
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9083..9700
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VWM9_9FIRM
TetR family transcriptional regulator {ECO:0000313|EMBL:KGJ52632.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
TetR family transcriptional regulator
L3_083_059G1_scaffold_482_13
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(9777..10661)
DNA (885bp) protein (295aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=G1VWN0_9FIRM
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:ENY89089.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_083_059G1_scaffold_482_14
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10961..11485
DNA (525bp) protein (175aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E4LXC9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY89090.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
putative phosphohydrolase, HD superfamily
L3_083_059G1_scaffold_482_15
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11482..11958
DNA (477bp) protein (159aa)
Ribosomal RNA large subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_00658}; EC=2.1.1.177 {ECO:0000256|HAMAP-Rule:MF_00658};; 23S rRNA (pseudouridine1915-N3)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; 23S rRNA m3Psi1915 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00658}; rRNA (pseudouridine-N3-)-methyltransferase RlmH {ECO:0000256|HAMAP-Rule:MF_00658}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Ribosomal RNA large subunit methyltransferase H n=7 Tax=Firmicutes RepID=E4LXC8_9CLOT
rRNA large subunit methyltransferase
L3_083_059G1_scaffold_482_16
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12206..14578
DNA (2373bp) protein (791aa)
Uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=H1AWX4_9FIRM
ABC transporter permease {ECO:0000313|EMBL:KGJ52628.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
ABC transporter permease
L3_083_059G1_scaffold_482_17
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14592..15362
DNA (771bp) protein (257aa)
ABC transporter, ATP-binding protein n=9 Tax=Firmicutes RepID=E4LXC6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGX70184.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
ABC transporter ATP-binding protein
L3_083_059G1_scaffold_482_18
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15369..16046
DNA (678bp) protein (226aa)
Response regulator receiver domain protein n=8 Tax=Firmicutes RepID=E4LXC5_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:KGJ52626.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
transcriptional regulator
L3_083_059G1_scaffold_482_19
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16117..17307
DNA (1191bp) protein (397aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=2 Tax=Firmicutes RepID=E4LXC4_9CLOT
hypothetical protein
L3_083_059G1_scaffold_482_20
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17684..18415
DNA (732bp) protein (244aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VWN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY89096.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
transcriptional regulator, MerR family
L3_083_059G1_scaffold_482_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19059..20048
DNA (990bp) protein (330aa)
ABC transporter substrate binding protein n=4 Tax=Firmicutes RepID=E4LXC1_9CLOT
Periplasmic binding domain protein {ECO:0000313|EMBL:EQJ48540.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ABC-type uncharacterized transport system, periplasmic component
L3_083_059G1_scaffold_482_22
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20311..21183
DNA (873bp) protein (291aa)
Branched-chain amino acid ABC transporter, permease protein n=3 Tax=Firmicutes RepID=E4LXC0_9CLOT
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFR36527.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
ABC-type uncharacterized transport system, permease component
L3_083_059G1_scaffold_482_23
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21176..21931
DNA (756bp) protein (252aa)
ABC transporter ATPase component (EC:3.6.3.-)
ABC transporter, ATP-binding protein n=4 Tax=Firmicutes RepID=E4LXB9_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR36554.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_083_059G1_scaffold_482_24
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22216..23352
DNA (1137bp) protein (379aa)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
glucose-1-phosphate adenylyltransferase (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VWP1_9FIRM
L3_083_059G1_scaffold_482_25
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23354..24469
DNA (1116bp) protein (372aa)
glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase, GlgD subunit n=5 Tax=Firmicutes RepID=E4LXB7_9CLOT
Glucose-1-phosphate adenylyltransferase {ECO:0000313|EMBL:KGJ52618.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
L3_083_059G1_scaffold_482_26
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24469..25908
DNA (1440bp) protein (480aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Glycogen synthase n=4 Tax=Firmicutes RepID=G1VWP3_9FIRM
glycogen synthase
L3_083_059G1_scaffold_482_27
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26282..26785
DNA (504bp) protein (168aa)
agaB; Galactosamine-specific IIB component of PTS system (EC:2.7.1.69)
PTS system sorbose subfamily IIB component n=1 Tax=Clostridium sp. HGF2 RepID=E4LXB5_9CLOT
PTS system sorbose subfamily IIB component {ECO:0000313|EMBL:EFR36611.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_083_059G1_scaffold_482_28
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

26842..29574
DNA (2733bp) protein (911aa)
Uncharacterized protein n=1 Tax=Clostridium innocuum 2959 RepID=N9VFD1_CLOIN
Transcriptional regulator {ECO:0000313|EMBL:KGJ52615.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
PTS system transcriptional activator
L3_083_059G1_scaffold_482_29
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

29649..30116
DNA (468bp) protein (156aa)
PTS system, mannose/fructose/sorbose family, IIB component n=5 Tax=Firmicutes RepID=E4LXB3_9CLOT
PTS system N-acetylgalactosamine-specific transporter subunit IIB {ECO:0000313|EMBL:KGJ52614.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
PTS system N-acetylgalactosamine-specific transporter subunit IIB
L3_083_059G1_scaffold_482_30
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

30145..30948
DNA (804bp) protein (268aa)
N-acetylgalactosamine permease IIC component 1 n=7 Tax=Firmicutes RepID=E4LXB2_9CLOT
PTS system, mannose/fructose/sorbose family, IIC component {ECO:0000313|EMBL:EHO24144.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
PTS sorbose-specific transporter subunit IIC
Displaying items 1-30 of 33 in total

View Taxonomy