ggKbase home page

L3_083_059G1_scaffold_548

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_548_1
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(252..1007)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GN51_SELRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL82188.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
L3_083_059G1_scaffold_548_2
Selenomonas ruminantium, Selenomonas, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

comp(1004..2071)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 / TAM6421) RepID=I0GN50_SELRL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL82187.1}; TaxID=927704 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Selenomonas.;" source="Selenomonas ruminantium subsp. lactilytica (strain NBRC 103574 /; TAM6421).;"
L3_083_059G1_scaffold_548_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2202..2765)
DNA (564bp) protein (188aa)
Site-specific recombinase, phage integrase family n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUK2_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EHM42265.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
site-specific recombinase XerD
L3_083_059G1_scaffold_548_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2927..3574)
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUK1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM42264.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
SprT-like family.
L3_083_059G1_scaffold_548_5
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3699..3977)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUK0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM42263.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
Phage-like protein endonuclease-like protein
L3_083_059G1_scaffold_548_6
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

4186..4407
DNA (222bp) protein (74aa)
Putative transcriptional regulator XRE family n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5ADG8_9FIRM
Putative transcriptional regulator XRE family {ECO:0000313|EMBL:CCX40773.1}; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
XRE family transcriptional regulator
L3_083_059G1_scaffold_548_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4563..4703
DNA (141bp) protein (47aa)
Uncharacterized protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YUJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHM42261.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
L3_083_059G1_scaffold_548_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5187..6374)
DNA (1188bp) protein (396aa)
Site-specific recombinase, phage integrase family n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BI09_9CLOT
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:ERI77729.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Site-specific recombinase XerD
L3_083_059G1_scaffold_548_9
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6462..6665)
DNA (204bp) protein (68aa)
Excisionase family DNA binding domain-containing protein n=2 Tax=Clostridiales RepID=H1CKZ7_9FIRM
DNA binding domain, excisionase family {ECO:0000313|EMBL:ERI77730.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
excisionase
L3_083_059G1_scaffold_548_10
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6662..7195)
DNA (534bp) protein (178aa)
Toxin-antitoxin system, toxin component, MazF family n=2 Tax=Clostridiales RepID=U2DDZ8_9CLOT
Toxin-antitoxin system, toxin component, MazF family {ECO:0000313|EMBL:ERI77731.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Growth inhibitor
L3_083_059G1_scaffold_548_11
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7791..8312)
DNA (522bp) protein (174aa)
RNA polymerase sigma factor, sigma-70 family n=2 Tax=Clostridiales RepID=U2C120_9CLOT
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EHO19111.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
RNA polymerase ECF-type sigma factor
L3_083_059G1_scaffold_548_12
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8910..9230)
DNA (321bp) protein (107aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2DE03_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI77736.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
XRE family transcriptional regulator
L3_083_059G1_scaffold_548_13
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9286..9645)
DNA (360bp) protein (120aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridiales RepID=U2D8F5_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI77737.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Helix-turn-helix.
L3_083_059G1_scaffold_548_14
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10006..10266)
DNA (261bp) protein (87aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2BI17_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI77739.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_083_059G1_scaffold_548_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10387..10656)
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CMY6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO19114.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
transcriptional regulator, XRE family
L3_083_059G1_scaffold_548_16
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10940..11833
DNA (894bp) protein (298aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridiales RepID=U2D8F9_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERI77742.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_083_059G1_scaffold_548_17
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11933..12916
DNA (984bp) protein (328aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CG09_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32287.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_083_059G1_scaffold_548_18
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12934..13356
DNA (423bp) protein (141aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CG10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32288.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_083_059G1_scaffold_548_19
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13391..14275
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BZT9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI77745.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_083_059G1_scaffold_548_20
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14518..15897
DNA (1380bp) protein (460aa)
Putative uncharacterized protein n=2 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CN14_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO18851.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Protein of unknown function DUF88.
L3_083_059G1_scaffold_548_21
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16814..17386
DNA (573bp) protein (191aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=U2BZU3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI77750.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_083_059G1_scaffold_548_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17329..17619
DNA (291bp) protein (97aa)
Putative uncharacterized protein n=2 Tax=Clostridiales RepID=H1CK11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26441.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_083_059G1_scaffold_548_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17641..17880
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26440.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
L3_083_059G1_scaffold_548_24
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18487..18963
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D2D0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI75637.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_083_059G1_scaffold_548_25
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19043..19501
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D7Z1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI75636.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_083_059G1_scaffold_548_26
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19839..20582
DNA (744bp) protein (248aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CK00_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26472.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_083_059G1_scaffold_548_27
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20603..21589
DNA (987bp) protein (329aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJZ9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26471.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Protein of unknown function (DUF3137).
L3_083_059G1_scaffold_548_28
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21622..22545
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CJZ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO26470.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Protein of unknown function (DUF1266).
L3_083_059G1_scaffold_548_29
unknown

Not on your lists

22947..23039
DNA (93bp) protein (31aa)

This feature has no annotations

L3_083_059G1_scaffold_548_30
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23150..23611
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2CCU8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI81838.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Displaying items 1-30 of 54 in total

View Taxonomy