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L3_083_059G1_scaffold_574

Search features with annotation key words

Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_574_1
Bhargavaea cecembensis, Bhargavaea, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(3..1676)
DNA (1674bp) protein (558aa)
TetM protein n=5 Tax=Firmicutes RepID=H6VNE0_CLODI
tetM; Tetracycline resistance protein Tn5397
TetM {ECO:0000313|EMBL:AEM62978.1}; TaxID=394098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Bhargavaea.;" source="Bhargavaea cecembensis.;"
L3_083_059G1_scaffold_574_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1961..2893)
DNA (933bp) protein (311aa)
Uncharacterized protein n=15 Tax=Firmicutes RepID=L2GYL6_ENTFC
conjugative transposon protein
Conjugative transposon protein {ECO:0000313|EMBL:CKH69021.1}; Orf13 {ECO:0000313|EMBL:AAO24817.1}; Putative conjugative transposon proteinTn5397,CTn3-Orf13 {ECO:0000313|EMBL:CEJ97034.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_059G1_scaffold_574_3
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(2890..3891)
DNA (1002bp) protein (334aa)
NLP/P60 n=13 Tax=Firmicutes RepID=C7WGW6_ENTFL
NLP/P60 {ECO:0000313|EMBL:EEU64774.1}; TaxID=565643 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis DS5.;"
NLP/P60 family protein
L3_083_059G1_scaffold_574_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3888..6056)
DNA (2169bp) protein (723aa)
Conjugative transposon membrane protein n=16 Tax=Firmicutes RepID=G3GHY9_9BACL
membrane protein
Putative membrane protein Tn5397, CTn3-Orf15 {ECO:0000313|EMBL:CAJ67334.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_059G1_scaffold_574_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6056..8503)
DNA (2448bp) protein (816aa)
Conjugative transposon ATP/GTP-binding protein n=13 Tax=Firmicutes RepID=C7WGW8_ENTFL
ATPase
Conjugative transposon protein {ECO:0000313|EMBL:CKH69143.1}; Putative ATPase Tn5397, CTn3-Orf16 {ECO:0000313|EMBL:CEJ97030.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_059G1_scaffold_574_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8487..8780)
DNA (294bp) protein (98aa)
Conjugative transposon membrane protein n=12 Tax=Firmicutes RepID=G3GHY7_9BACL
conjugative transposon protein
Putative conjugative transposon protein Tn5397,CTn3-Orf17 {ECO:0000313|EMBL:CAJ67332.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_059G1_scaffold_574_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8967..9464)
DNA (498bp) protein (166aa)
Conjugative transposon protein n=14 Tax=Firmicutes RepID=C7WGX0_ENTFL
antirestriction protein
Putative antirestriction protein Tn5397,CTn3-Orf18 {ECO:0000313|EMBL:CAJ67331.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_059G1_scaffold_574_8
Enterococcus faecalis, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9581..9802)
DNA (222bp) protein (74aa)
Uncharacterized protein n=449 Tax=Bacteria RepID=L7VTG0_LISMN
Tn916 ORF19 protein
Uncharacterized protein {ECO:0000313|EMBL:EOE09588.1}; TaxID=1151200 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus faecalis EnGen0079.;"
L3_083_059G1_scaffold_574_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9845..11068)
DNA (1224bp) protein (408aa)
Phage replication initiation n=8 Tax=Firmicutes RepID=L2GYI3_ENTFC
Conjugative transposon replication initiation factor {ECO:0000313|EMBL:CKH69223.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
replication initiation factor
L3_083_059G1_scaffold_574_10
Bhargavaea cecembensis, Bhargavaea, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(11227..12612)
DNA (1386bp) protein (462aa)
Conjugative transposon FtsK/SpoIIIE-family protein n=14 Tax=Firmicutes RepID=C7WGX3_ENTFL
cell-division FtsK/SpoIIIE-family protein
Conjugative transposon FtsK/SpoIIIE family protein {ECO:0000313|EMBL:AEM62975.1}; TaxID=394098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Bhargavaea.;" source="Bhargavaea cecembensis.;"
L3_083_059G1_scaffold_574_11
Bhargavaea cecembensis, Bhargavaea, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(12646..13032)
DNA (387bp) protein (129aa)
Conjugative transposon protein n=16 Tax=Firmicutes RepID=C7WGX4_ENTFL
putative conjugative transposon protein DUF961family Tn5397, CTn3-Orf22
Conjugative transposon protein {ECO:0000313|EMBL:AEM62976.1}; TaxID=394098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Bhargavaea.;" source="Bhargavaea cecembensis.;"
L3_083_059G1_scaffold_574_12
Bhargavaea cecembensis, Bhargavaea, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13054..13368)
DNA (315bp) protein (105aa)
Conjugative transposon protein n=14 Tax=Firmicutes RepID=C7WGX5_ENTFL
conjugative transposon protein
Conjugative transposon protein {ECO:0000313|EMBL:AEM62977.1}; TaxID=394098 species="Bacteria; Firmicutes; Bacilli; Bacillales; Planococcaceae; Bhargavaea.;" source="Bhargavaea cecembensis.;"
L3_083_059G1_scaffold_574_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13638..14177)
DNA (540bp) protein (180aa)
Fic/DOC family protein n=2 Tax=Clostridium difficile RepID=T4PJ59_CLODI
fic family protein
Putative Fic family protein filamentation induced by cAMP protein {ECO:0000313|EMBL:CCL32683.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_059G1_scaffold_574_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14623..15303)
DNA (681bp) protein (227aa)
ABC-2 transporter family protein n=84 Tax=Clostridium difficile RepID=T2UF31_CLODI
ABC-2 transporter family protein {ECO:0000313|EMBL:EQI92457.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
lantibiotic ABC transporter permease
L3_083_059G1_scaffold_574_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15300..16229)
DNA (930bp) protein (310aa)
ABC transporter family protein n=23 Tax=Clostridium difficile RepID=T2V5B9_CLODI
ABC-type transportsystem,lantibiotic/multidrug-family ATP-binding protein
ABC-type transport system,lantibiotic/multidrug-family ATP-binding protein {ECO:0000313|EMBL:CAJ67477.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_059G1_scaffold_574_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16299..17249)
DNA (951bp) protein (317aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Two-component sensor histidine kinase n=2 Tax=Clostridium difficile RepID=U4D418_CLODI
Two-component sensor histidine kinase
L3_083_059G1_scaffold_574_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17216..17905)
DNA (690bp) protein (230aa)
Response regulator n=2 Tax=Clostridium difficile RepID=T4PQ10_CLODI
Two-component response regulator {ECO:0000313|EMBL:CDT46309.1}; Two-component response regulator (YcbM) {ECO:0000313|EMBL:CDS83924.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
two-component response regulator
L3_083_059G1_scaffold_574_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17980..18099)
DNA (120bp) protein (40aa)
Uncharacterized protein n=56 Tax=Clostridium difficile RepID=T2VX08_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE69345.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_059G1_scaffold_574_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18313..18618)
DNA (306bp) protein (102aa)
Putative membrane protein n=1 Tax=Clostridium difficile CD69 RepID=T3AF51_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQG77492.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_059G1_scaffold_574_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19392..19559)
DNA (168bp) protein (56aa)
DNA-binding helix-turn-helix protein n=179 Tax=Clostridium difficile RepID=G6BYW6_CLODI
transcriptional regulator
Helix-turn-helix family protein {ECO:0000313|EMBL:EQG77892.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_059G1_scaffold_574_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19611..20018)
DNA (408bp) protein (136aa)
Uncharacterized protein n=181 Tax=Clostridium difficile RepID=G6BYW5_CLODI
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EQE69339.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_059G1_scaffold_574_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20104..20592)
DNA (489bp) protein (163aa)
Uncharacterized protein n=131 Tax=Clostridium difficile RepID=C9XKS6_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQG77509.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_059G1_scaffold_574_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20797..21906)
DNA (1110bp) protein (370aa)
Uncharacterized protein n=31 Tax=Clostridium difficile RepID=T2UZ68_CLODI
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CEJ97178.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_059G1_scaffold_574_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22279..22479)
DNA (201bp) protein (67aa)
Uncharacterized protein n=183 Tax=Clostridium difficile RepID=C9XKS4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE02441.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_083_059G1_scaffold_574_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22621..23064)
DNA (444bp) protein (148aa)
Acetyltransferase, GNAT family n=80 Tax=Clostridium difficile RepID=G6BYW1_CLODI
acetyltransferase
Acetyltransferase family protein {ECO:0000313|EMBL:EQG77436.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_059G1_scaffold_574_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23578..24468)
DNA (891bp) protein (297aa)
Radical SAM superfamily protein n=2 Tax=Clostridium difficile RepID=T4PVM7_CLODI
Putative radical SAM superfamily protein, DUF85 family {ECO:0000313|EMBL:CCL24884.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
radical SAM protein
L3_083_059G1_scaffold_574_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24860..25666)
DNA (807bp) protein (269aa)
Alpha/beta hydrolase fold family protein n=2 Tax=Clostridium difficile RepID=T4PUL4_CLODI
putative hydrolase
Putative hydrolase {ECO:0000313|EMBL:CEJ97174.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_059G1_scaffold_574_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25774..26142)
DNA (369bp) protein (123aa)
Uncharacterized protein n=42 Tax=Clostridium difficile RepID=T2WY93_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL32648.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_059G1_scaffold_574_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26466..27545)
DNA (1080bp) protein (360aa)
DNA alkylation repair enzyme family protein n=2 Tax=Clostridium difficile RepID=T4PNL0_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBE02433.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
L3_083_059G1_scaffold_574_30
Guillardia theta, Guillardia, Pyrenomonadales, Cryptophyta, Eukaryota

Not on your lists

comp(27783..27884)
DNA (102bp) protein (34aa)
Uncharacterized protein n=1 Tax=Guillardia theta CCMP2712 RepID=L1JQQ3_GUITH
Uncharacterized protein {ECO:0000313|EMBL:EKX50891.1, ECO:0000313|EnsemblProtists:EKX50891}; TaxID=905079 species="Eukaryota; Cryptophyta; Pyrenomonadales; Geminigeraceae; Guillardia.;" source="Guillardia theta CCMP2712.;"
hypothetical protein
Displaying 30 items

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