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L3_083_059G1_scaffold_783

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_059G1_scaffold_783_1
Ruminococcus bromii, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..90
DNA (90bp) protein (30aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKA3_9FIRM
hypothetical protein
Site-specific recombinases, DNA invertase Pin homologs {ECO:0000313|EMBL:CBL16229.1}; TaxID=657321 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bromii L2-63.;"
L3_083_059G1_scaffold_783_2
Acidaminococcus sp. D21, Acidaminococcus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

Not on your lists

284..1153
DNA (870bp) protein (290aa)
Uncharacterized protein n=16 Tax=Firmicutes RepID=A8SX27_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEH90027.1}; TaxID=563191 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Acidaminococcaceae; Acidaminococcus.;" source="Acidaminococcus sp. D21.;"
hypothetical protein
L3_083_059G1_scaffold_783_3
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1331..1732
DNA (402bp) protein (134aa)
Uncharacterized protein n=19 Tax=Firmicutes RepID=A8SX25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFE13569.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
conjugative transposon protein
L3_083_059G1_scaffold_783_4
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1683..4121
DNA (2439bp) protein (813aa)
Uncharacterized protein n=20 Tax=Firmicutes RepID=A8SX24_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDR46893.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
putative hydrolase Tn1549-like, CTn4-Orf9
L3_083_059G1_scaffold_783_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4118..5077
DNA (960bp) protein (320aa)
DNA modification methylase (EC:2.1.1.72)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
DNA modification methylase n=15 Tax=Clostridiales RepID=D4L9D7_9FIRM
L3_083_059G1_scaffold_783_6
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5113..7182
DNA (2070bp) protein (690aa)
Uncharacterized protein n=14 Tax=Firmicutes RepID=A8SX22_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49715.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_083_059G1_scaffold_783_7
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7217..7495
DNA (279bp) protein (93aa)
Uncharacterized protein n=17 Tax=Firmicutes RepID=A8SX20_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE13573.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_083_059G1_scaffold_783_8
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7488..8189
DNA (702bp) protein (234aa)
Uncharacterized protein n=15 Tax=Firmicutes RepID=A8SX19_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHF06210.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L3_083_059G1_scaffold_783_9
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8186..8374
DNA (189bp) protein (63aa)
Uncharacterized protein n=14 Tax=Firmicutes RepID=A8SX18_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHF06209.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
L3_083_059G1_scaffold_783_10
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8390..10480
DNA (2091bp) protein (697aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
Topoisomerase IA (EC:5.99.1.2)
DNA topoisomerase III n=1 Tax=Erysipelotrichaceae bacterium 5_2_54FAA RepID=U5FB68_9FIRM
L3_083_059G1_scaffold_783_11
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10693..14256
DNA (3564bp) protein (1188aa)
Uncharacterized protein n=14 Tax=Firmicutes RepID=B0G6X6_9FIRM
Domain of unknown function (DUF955)./Antirestriction protein (ArdA).
Uncharacterized protein {ECO:0000313|EMBL:EEA81302.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
L3_083_059G1_scaffold_783_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14260..15213
DNA (954bp) protein (318aa)
Uncharacterized protein n=15 Tax=Firmicutes RepID=B0G6X5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EGN49721.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_083_059G1_scaffold_783_13
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15216..15422
DNA (207bp) protein (69aa)
Uncharacterized protein n=31 Tax=Firmicutes RepID=A8RSQ7_9CLOT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EDR97069.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
L3_083_059G1_scaffold_783_14
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15419..15784
DNA (366bp) protein (122aa)
Uncharacterized protein n=12 Tax=Firmicutes RepID=B0G6X3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFE13580.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_083_059G1_scaffold_783_15
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15962..16213)
DNA (252bp) protein (84aa)
Uncharacterized protein n=17 Tax=Firmicutes RepID=A8SX10_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD20457.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_083_059G1_scaffold_783_16
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16277..17623)
DNA (1347bp) protein (449aa)
Relaxase/Mobilisation nuclease domain n=17 Tax=Bacteria RepID=D4L9E8_9FIRM
Relaxase/Mobilisation nuclease domain.
Relaxase/mobilization nuclease domain protein {ECO:0000313|EMBL:EDS10543.1}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
L3_083_059G1_scaffold_783_17
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17584..17913)
DNA (330bp) protein (110aa)
Bacterial mobilisation protein (MobC) n=19 Tax=Bacteria RepID=D4L9E9_9FIRM
Bacterial mobilisation protein (MobC).
Bacterial mobilization protein MobC {ECO:0000313|EMBL:EDR97073.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
L3_083_059G1_scaffold_783_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18181..18429)
DNA (249bp) protein (83aa)
Helix-turn-helix n=22 Tax=Bacteria RepID=D4L9F0_9FIRM
Helix-turn-helix.
Uncharacterized protein {ECO:0000313|EMBL:ETD20460.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_083_059G1_scaffold_783_19
Lachnospiraceae bacterium oral taxon 082, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18919..19098
DNA (180bp) protein (60aa)
Uncharacterized protein n=17 Tax=Bacteria RepID=B0G6W8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHO49676.1}; TaxID=861454 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium oral taxon 082 str. F0431.;"
L3_083_059G1_scaffold_783_20
Coprococcus eutactus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19122..20111
DNA (990bp) protein (330aa)
radical SAM enzyme, Cfr family (EC:2.1.1.-)
23S rRNA m2A2503 methyltransferase {ECO:0000313|EMBL:EDP25442.1}; EC=2.1.1.- {ECO:0000313|EMBL:EDP25442.1};; TaxID=411474 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus eutactus ATCC 27759.;"
Radical SAM enzyme, Cfr family n=23 Tax=Firmicutes RepID=D4L9F2_9FIRM
L3_083_059G1_scaffold_783_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20606..21046
DNA (441bp) protein (147aa)
Sigma-70 family RNA polymerase sigma factor n=13 Tax=Clostridiales RepID=N9W9M7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ETD20463.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
sigma-70 family RNA polymerase sigma factor
L3_083_059G1_scaffold_783_22
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21027..21287
DNA (261bp) protein (87aa)
Uncharacterized protein n=21 Tax=root RepID=K1RYY9_9ZZZZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFE13587.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
L3_083_059G1_scaffold_783_23
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21765..21932
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Clostridium difficile E9 RepID=U4APP7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EDR97079.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
hypothetical protein
L3_083_059G1_scaffold_783_24
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22033..23709
DNA (1677bp) protein (559aa)
Site-specific recombinases, DNA invertase Pin homologs n=25 Tax=Firmicutes RepID=D4L9F5_9FIRM
Resolvase, N-terminal domain protein {ECO:0000313|EMBL:EDR46872.1}; TaxID=411461 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans ATCC 27755.;"
Site-specific recombinases, DNA invertase Pin homologs
L3_083_059G1_scaffold_783_25
[Clostridium] symbiosum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23758..23919)
DNA (162bp) protein (54aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FDE4_9CLOT
Resolvase {ECO:0000313|EMBL:EGA92931.1}; TaxID=742740 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] symbiosum WAL-14163.;"
L3_083_059G1_scaffold_783_26
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24125..25636
DNA (1512bp) protein (504aa)
Sel1 repeat protein n=2 Tax=Clostridium RepID=U2D8M2_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05550.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Sel1 repeat.
L3_083_059G1_scaffold_783_27
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25633..26925)
DNA (1293bp) protein (431aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FDE2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF05549.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
small GTP-binding protein domain
L3_083_059G1_scaffold_783_28
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26922..27179)
DNA (258bp) protein (86aa)
FeoA domain protein n=1 Tax=Clostridium symbiosum ATCC 14940 RepID=U2C002_CLOSY
Uncharacterized protein {ECO:0000313|EMBL:EHF05548.1}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
Fe2+ transport system protein A
L3_083_059G1_scaffold_783_29
Clostridium sp. 7_3_54FAA, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27267..28340)
DNA (1074bp) protein (358aa)
Sugar fermentation stimulation protein homolog n=1 Tax=Clostridium sp. 7_3_54FAA RepID=G5FDE0_9CLOT
Sugar fermentation stimulation protein homolog {ECO:0000256|HAMAP-Rule:MF_00095}; TaxID=665940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. 7_3_54FAA.;"
sugar fermentation stimulation protein
Displaying 29 items

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