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L3_083_088G1_scaffold_9

Search features with annotation key words

Displaying items 1-30 of 160 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_9_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(94..9495)
DNA (9402bp) protein (3134aa)
Type I multifunctional fatty acid synthase n=3 Tax=Bifidobacterium bifidum RepID=E3EN51_BIFBS
Type I multifunctional fatty acid synthase {ECO:0000313|EMBL:ADO53784.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
fas; Type I multifunctional fatty acid synthase
L3_083_088G1_scaffold_9_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9599..11233)
DNA (1635bp) protein (545aa)
Acetyl-/propionyl-CoA carboxylase beta chain n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EN52_BIFBS
accD; acetyl-/propionyl-CoA carboxylase beta chain
Acetyl-/propionyl-CoA carboxylase beta chain {ECO:0000313|EMBL:ADO53785.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_9_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11233..13143)
DNA (1911bp) protein (637aa)
Acetyl-/propionyl-CoA carboxylase alpha chain n=4 Tax=Bifidobacterium RepID=E3EN53_BIFBS
accC; acetyl-/propionyl-CoA carboxylase alpha chain
Acetyl-/propionyl-CoA carboxylase alpha chain {ECO:0000313|EMBL:ADO53786.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_9_4
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13390..13971
DNA (582bp) protein (194aa)
BioY protein n=5 Tax=Bifidobacterium RepID=E4NZL3_BIFBP
bioY; transmembranal protein
BioY protein {ECO:0000313|EMBL:CDB23166.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_9_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14150..14992)
DNA (843bp) protein (281aa)
Biotin-(Acetyl-CoA carboxylase) ligase {ECO:0000313|EMBL:KFI43951.1}; EC=6.3.4.15 {ECO:0000313|EMBL:KFI43951.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
biotin-(acetyl-CoA carboxylase) ligase (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DST0_BIFBI
L3_083_088G1_scaffold_9_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15117..17237
DNA (2121bp) protein (707aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EN56_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADO53789.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_9_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17268..18086
DNA (819bp) protein (273aa)
Transcriptional regulator n=9 Tax=Bifidobacterium RepID=E4NZL6_BIFBP
putative transcriptional regulator, PucR family protein
Putative transcriptional regulator, PucR family protein {ECO:0000313|EMBL:AFL05211.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_088G1_scaffold_9_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18146..18700)
DNA (555bp) protein (185aa)
Endonuclease NucS {ECO:0000256|HAMAP-Rule:MF_00722}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00722};; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Endonuclease NucS n=2 Tax=Bifidobacterium bifidum RepID=K2H805_BIFBI
hypothetical protein
L3_083_088G1_scaffold_9_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19214..19516)
DNA (303bp) protein (101aa)
AtpC ATP synthase epsilon chain n=8 Tax=Bifidobacterium RepID=E4NZL8_BIFBP
ATP synthase subunit epsilon
AtpC ATP synthase epsilon chain {ECO:0000313|EMBL:CDB23080.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_9_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19516..21000)
DNA (1485bp) protein (495aa)
atpD; ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ATP synthase subunit beta n=6 Tax=Bifidobacterium bifidum RepID=E3EN60_BIFBS
L3_083_088G1_scaffold_9_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21009..21947)
DNA (939bp) protein (313aa)
ATP synthase gamma chain n=5 Tax=Bifidobacterium bifidum RepID=E4NZM0_BIFBP
atpG; ATP synthase subunit gamma
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_088G1_scaffold_9_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21951..23630)
DNA (1680bp) protein (560aa)
atpA; ATP synthase subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
ATP synthase subunit alpha n=6 Tax=Bifidobacterium bifidum RepID=E4NZM1_BIFBP
L3_083_088G1_scaffold_9_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23704..24531)
DNA (828bp) protein (276aa)
ATP synthase subunit delta n=3 Tax=Bifidobacterium RepID=E4NZM2_BIFBP
tph; ATP synthase delta chain
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_083_088G1_scaffold_9_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24561..25091)
DNA (531bp) protein (177aa)
ATP synthase subunit b n=7 Tax=Bifidobacterium RepID=E3EN64_BIFBS
atpF; ATP synthase subunit B
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_9_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25142..25372)
DNA (231bp) protein (77aa)
ATP synthase C chain n=8 Tax=Bifidobacterium RepID=E3EN65_BIFBS
atpE; ATP synthase subunit C
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_088G1_scaffold_9_16
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25484..26296)
DNA (813bp) protein (271aa)
atpB; ATP synthase F0 subunit A (EC:3.6.3.14)
ATP synthase subunit a n=8 Tax=Bifidobacterium RepID=E3EN66_BIFBS
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_9_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26826..27860)
DNA (1035bp) protein (345aa)
metA; homoserine O-succinyl transferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Homoserine O-succinyltransferase n=5 Tax=Bifidobacterium RepID=E4NZM6_BIFBP
L3_083_088G1_scaffold_9_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28061..28423)
DNA (363bp) protein (121aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=E4VBD6_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53801.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_9_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28749..28976
DNA (228bp) protein (76aa)
Toxin-antitoxin system, antitoxin component, ribbon-helix-helix domain protein n=2 Tax=Bifidobacterium bifidum RepID=E4VBD4_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF16718.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_083_088G1_scaffold_9_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29126..31399)
DNA (2274bp) protein (758aa)
LPXTG-motif protein cell wall anchor domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2BX83_BIFBI
Putative secreted protein {ECO:0000313|EMBL:KFI43966.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_083_088G1_scaffold_9_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31917..33938
DNA (2022bp) protein (674aa)
alpha-amylase (EC:3.2.1.1)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase n=2 Tax=Bifidobacterium RepID=I3WK32_BIFBI
L3_083_088G1_scaffold_9_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34105..34599
DNA (495bp) protein (165aa)
ppa; inorganic pyrophosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
Inorganic pyrophosphatase n=8 Tax=Bifidobacterium RepID=E3EN72_BIFBS
L3_083_088G1_scaffold_9_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

35014..35544
DNA (531bp) protein (177aa)
Putative manganese efflux pump MntP n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EN73_BIFBS
hypothetical protein
Putative manganese efflux pump MntP {ECO:0000256|HAMAP-Rule:MF_01521}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_9_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35691..35786)
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DSV0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82826.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_088G1_scaffold_9_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(36023..36772)
DNA (750bp) protein (250aa)
Uncharacterized protein n=7 Tax=Bifidobacterium RepID=I3WK36_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDB24596.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_9_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36928..37689
DNA (762bp) protein (254aa)
Transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=K2HTH9_BIFBI
Transcriptional regulator {ECO:0000313|EMBL:EKE49837.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
glnR; transcriptional regulator
L3_083_088G1_scaffold_9_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37702..38364
DNA (663bp) protein (221aa)
nth; endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Endonuclease III n=3 Tax=Bifidobacterium bifidum RepID=E3EN76_BIFBS
L3_083_088G1_scaffold_9_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38448..40004
DNA (1557bp) protein (519aa)
Solute binding protein of ABC transporter system for peptides n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZN6_BIFBP
peptide ABC transporter substrate-binding protein
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:EFR50891.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_088G1_scaffold_9_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


40089..42830
DNA (2742bp) protein (914aa)
Valine--tRNA ligase {ECO:0000256|SAAS:SAAS00105779}; EC=6.1.1.9 {ECO:0000256|SAAS:SAAS00105779};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Valine--tRNA ligase n=4 Tax=Bifidobacterium RepID=E3EN78_BIFBS
valS; valyl-tRNA synthetase
L3_083_088G1_scaffold_9_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(42948..45146)
DNA (2199bp) protein (733aa)
Conserved hypothetical secreted protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZN8_BIFBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53812.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 160 in total

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