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L3_083_088G1_scaffold_16

Search features with annotation key words

Displaying items 1-30 of 147 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_16_1
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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412..957
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPY8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67735.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_083_088G1_scaffold_16_2
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1289..1531
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5U977_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67736.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_083_088G1_scaffold_16_3
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1552..1824
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UFW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67737.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_083_088G1_scaffold_16_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2432..3286)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67738.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
AraC-type DNA-binding domain-containing proteins
L3_083_088G1_scaffold_16_5
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3529..4911
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67739.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
sugar (Glycoside-Pentoside-Hexuronide) transporter
L3_083_088G1_scaffold_16_6
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4913..6349
DNA (1437bp) protein (479aa)
alpha-L-fucosidase (EC:3.2.1.51)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TPZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ67740.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
L3_083_088G1_scaffold_16_7
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6425..8326
DNA (1902bp) protein (634aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX69369.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
L3_083_088G1_scaffold_16_8
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8310..9257
DNA (948bp) protein (316aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046613};; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
Beta galactosidase small chain. (EC:3.2.1.23)
Beta galactosidase small subunit n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WVQ4_9FIRM
L3_083_088G1_scaffold_16_9
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9510..10310
DNA (801bp) protein (267aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UAS7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68276.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcriptional regulator, AraC family
L3_083_088G1_scaffold_16_10
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10420..11193
DNA (774bp) protein (258aa)
Predicted DNA-binding proteins n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UHI0_9FIRM
Predicted DNA-binding proteins {ECO:0000313|EMBL:CCZ68277.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Predicted DNA-binding proteins
L3_083_088G1_scaffold_16_11
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11403..12893
DNA (1491bp) protein (497aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TR58_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68278.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
conserved hypothetical protein TIGR02677
L3_083_088G1_scaffold_16_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12890..14035
DNA (1146bp) protein (382aa)
TIGR02678 family protein n=3 Tax=Lachnospiraceae RepID=A7B1U4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46562.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
conserved hypothetical protein TIGR02678
L3_083_088G1_scaffold_16_13
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14028..18119
DNA (4092bp) protein (1364aa)
TIGR02680 family protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TRD9_9FIRM
TIGR02680 family protein {ECO:0000313|EMBL:CCZ68280.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
conserved hypothetical protein TIGR02680
L3_083_088G1_scaffold_16_14
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18116..19411
DNA (1296bp) protein (432aa)
Putative TIGR02679 family protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1U6_RUMGN
Putative TIGR02679 family protein {ECO:0000313|EMBL:EDN78218.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_083_088G1_scaffold_16_15
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19438..20670
DNA (1233bp) protein (411aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=A7B1U7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:CCZ68282.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_083_088G1_scaffold_16_16
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20655..21071
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1U8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78220.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_083_088G1_scaffold_16_17
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21307..22845
DNA (1539bp) protein (513aa)
Asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1U9_RUMGN
Putative asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EDN78221.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_083_088G1_scaffold_16_18
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22899..24335)
DNA (1437bp) protein (479aa)
Pyridoxal-dependent decarboxylase domain protein n=2 Tax=Clostridiales RepID=A7B1V0_RUMGN
Pyridoxal-dependent decarboxylase domain protein {ECO:0000313|EMBL:CCZ68286.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
pyridoxal-dependent decarboxylase
L3_083_088G1_scaffold_16_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24460..25374
DNA (915bp) protein (305aa)
LysR substrate binding domain protein n=3 Tax=Lachnospiraceae RepID=A7B1V1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46555.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
LysR family transcriptional regulator
L3_083_088G1_scaffold_16_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25377..26459)
DNA (1083bp) protein (361aa)
Dihydrodipicolinate reductase domain protein n=3 Tax=Lachnospiraceae RepID=A7B1V2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46554.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_083_088G1_scaffold_16_21
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26690..28030
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TY70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ68289.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
hypothetical protein
L3_083_088G1_scaffold_16_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28047..29003
DNA (957bp) protein (319aa)
Peptidase, U32 family n=3 Tax=Lachnospiraceae RepID=A7B1V4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19418.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Collagenase and related proteases
L3_083_088G1_scaffold_16_23
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28997..29812)
DNA (816bp) protein (272aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B1V5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46551.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_083_088G1_scaffold_16_24
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30145..30570
DNA (426bp) protein (142aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BY51_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46550.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
phosphotransferase system, mannose/fructose-specific component IIA
L3_083_088G1_scaffold_16_25
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30847..31332
DNA (486bp) protein (162aa)
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB (EC:2.7.1.69)
PTS system sorbose subfamily IIB component n=3 Tax=Lachnospiraceae RepID=A7B1V8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19415.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_083_088G1_scaffold_16_26
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31361..32158
DNA (798bp) protein (266aa)
PTS system sorbose-specific iic component n=3 Tax=Lachnospiraceae RepID=A7B1V9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46548.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L3_083_088G1_scaffold_16_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32155..32979
DNA (825bp) protein (275aa)
PTS system mannose/fructose/sorbose family IID component n=3 Tax=Lachnospiraceae RepID=A7B1W0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19413.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
PTS system IID component, Man family (TC 4.A.6)
L3_083_088G1_scaffold_16_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32996..35170
DNA (2175bp) protein (725aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B1W1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN46546.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_083_088G1_scaffold_16_29
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35154..36272
DNA (1119bp) protein (373aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B1W2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD19411.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Protein of unknown function (DUF2961).
L3_083_088G1_scaffold_16_30
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36696..36935
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B1W4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN78236.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Displaying items 1-30 of 147 in total

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