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L3_083_088G1_scaffold_18

Search features with annotation key words

Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_18_1
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(235..438)
DNA (204bp) protein (68aa)
hypothetical protein n=1 Tax=Blautia producta RepID=UPI00037644A8
Uncharacterized protein {ECO:0000313|EMBL:EHO84768.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
Sporulation initiation factor Spo0A C terminal.
L3_083_088G1_scaffold_18_2
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

557..811
DNA (255bp) protein (85aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IJQ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI58271.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Helix-turn-helix.
L3_083_088G1_scaffold_18_3
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(884..2446)
DNA (1563bp) protein (521aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2ZF33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62589.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
MobA/MobL family.
L3_083_088G1_scaffold_18_4
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2843..4207)
DNA (1365bp) protein (455aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YK33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62590.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
Predicted P-loop ATPase and inactivated derivatives
L3_083_088G1_scaffold_18_5
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4214..4798)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YEG5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62591.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
DNA primase (bacterial type)
L3_083_088G1_scaffold_18_6
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5012..5359)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YXV2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62592.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
hypothetical protein
L3_083_088G1_scaffold_18_7
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5359..6447)
DNA (1089bp) protein (363aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YDF0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62593.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
Site-specific recombinase XerD
L3_083_088G1_scaffold_18_8
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6460..6648)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2ZF40_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62594.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
hypothetical protein
L3_083_088G1_scaffold_18_9
Coprococcus sp. HPP0048, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6984..7505
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Coprococcus sp. HPP0048 RepID=S2YK40_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EPD62595.1}; TaxID=1078091 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0048.;"
Helix-turn-helix.
L3_083_088G1_scaffold_18_10
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7818..9359)
DNA (1542bp) protein (514aa)
GMP synthase [glutamine-hydrolyzing] {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008788}; EC=6.3.5.2 {ECO:0000256|HAMAP-Rule:MF_00344, ECO:0000256|SAAS:SAAS00008728};; GMP synthetase {ECO:0000256|HAMAP-Rule:MF_00344}; Glutamine amidotransferase {ECO:0000256|HAMAP-Rule:MF_00344}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
GMP synthase [glutamine-hydrolyzing] n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JZB1_9CLOT
GMP synthase
L3_083_088G1_scaffold_18_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9648..12479)
DNA (2832bp) protein (944aa)
UvrABC system protein A n=1 Tax=Clostridium sp. CAG:7 RepID=R5IZJ4_9CLOT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_00205}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
excinuclease ABC, A subunit
L3_083_088G1_scaffold_18_12
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12658..13638)
DNA (981bp) protein (327aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HJD9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHE98365.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
nucleoside ABC transporter membrane protein
L3_083_088G1_scaffold_18_13
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13654..14772)
DNA (1119bp) protein (373aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6K283_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB64196.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
nucleoside ABC transporter membrane protein
L3_083_088G1_scaffold_18_14
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14765..16297)
DNA (1533bp) protein (511aa)
nucleoside ABC transporter ATP-binding protein (EC:3.6.3.17)
Sugar ABC transporter ATP-binding protein n=2 Tax=Clostridium bolteae RepID=N9ZW45_9CLOT
Sugar ABC transporter ATP-binding protein {ECO:0000313|EMBL:ENZ49764.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
L3_083_088G1_scaffold_18_15
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16424..17698)
DNA (1275bp) protein (425aa)
Basic membrane protein A n=9 Tax=Clostridium RepID=N9V889_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23860.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
nucleoside-binding protein
L3_083_088G1_scaffold_18_16
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17845..19170)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9XCI6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY93371.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
Exo-poly-alpha-D-galacturonosidase
L3_083_088G1_scaffold_18_17
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19154..21331)
DNA (2178bp) protein (726aa)
Putative unsaturated rhamnogalacturonyl hydrolase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VN03_CLOSH
putative unsaturated rhamnogalacturonyl hydrolase
Putative unsaturated rhamnogalacturonyl hydrolase {ECO:0000313|EMBL:AGC68044.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_083_088G1_scaffold_18_18
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21348..24503)
DNA (3156bp) protein (1052aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5TQ59_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ59007.1}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
hypothetical protein
L3_083_088G1_scaffold_18_19
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24543..26072)
DNA (1530bp) protein (510aa)
Extracellular solute-binding protein family 1 n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KST4_CLOPH
extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ABX40728.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_083_088G1_scaffold_18_20
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26100..27011)
DNA (912bp) protein (304aa)
Multiple sugar transport system permease n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7K4U8_9FIRM
Multiple sugar transport system permease {ECO:0000313|EMBL:EGN43186.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
carbohydrate ABC transporter membrane protein 2
L3_083_088G1_scaffold_18_21
Paenibacillus sp. FSL R7-0331, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27030..27980)
DNA (951bp) protein (317aa)
protein lplB n=1 Tax=Paenibacillus massiliensis RepID=UPI00035F8E49
protein lplB
Protein lplB {ECO:0000313|EMBL:AIQ51593.1}; TaxID=1536773 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus sp. FSL R7-0331.;"
L3_083_088G1_scaffold_18_22
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28301..30604)
DNA (2304bp) protein (768aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KST5_CLOPH
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABX40729.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_083_088G1_scaffold_18_23
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30892..32442)
DNA (1551bp) protein (517aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
Ribonuclease Y n=9 Tax=Clostridium RepID=G5HZC5_9CLOT
metal dependent phosphohydrolase
L3_083_088G1_scaffold_18_24
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32591..33196)
DNA (606bp) protein (202aa)
Regulatory protein RecX n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EL54_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
regulatory protein RecX
L3_083_088G1_scaffold_18_25
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(33193..34428)
DNA (1236bp) protein (412aa)
Protein RecA n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EL55_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
protein RecA
L3_083_088G1_scaffold_18_26
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34692..35777)
DNA (1086bp) protein (362aa)
Tat pathway signal sequence domain protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EL56_9FIRM
Tat pathway signal sequence domain protein {ECO:0000313|EMBL:EEQ58395.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
hypothetical protein
L3_083_088G1_scaffold_18_27
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35856..37025)
DNA (1170bp) protein (390aa)
ribose-phosphate pyrophosphokinase (EC:2.7.6.1)
Ribose-phosphate diphosphokinase n=10 Tax=Clostridium RepID=N9WU11_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF23930.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
L3_083_088G1_scaffold_18_28
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37137..38117)
DNA (981bp) protein (327aa)
DNA replication protein DnaC n=2 Tax=Clostridium bolteae RepID=N9ZJ93_9CLOT
DNA replication protein DnaC {ECO:0000313|EMBL:ENZ46334.1}; TaxID=997894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90A9.;"
IstB domain-containing protein ATP-binding protein
L3_083_088G1_scaffold_18_29
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38129..39256)
DNA (1128bp) protein (376aa)
DnaD domain-containing protein n=1 Tax=Clostridium clostridioforme 90A8 RepID=N9ZIE8_9CLOT
DnaD domain-containing protein {ECO:0000313|EMBL:ENZ20154.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
primosome subunit DnaD
L3_083_088G1_scaffold_18_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39533..40918)
DNA (1386bp) protein (462aa)
UDP-N-acetylmuramate--L-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344}; EC=6.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00046, ECO:0000256|SAAS:SAAS00243344};; UDP-N-acetylmuramoyl-L-alanine synthetase {ECO:0000256|HAMAP-Rule:MF_00046}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J385_9CLOT
UDP-N-acetylmuramate--L-alanine ligase
Displaying items 1-30 of 142 in total

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