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L3_083_088G1_scaffold_38

Search features with annotation key words

Displaying items 1-30 of 104 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_38_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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376..2085
DNA (1710bp) protein (570aa)
Putative Membrane protein n=2 Tax=Clostridium difficile RepID=U4C2U1_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQG73757.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
hypothetical protein
L3_083_088G1_scaffold_38_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2100..2972
DNA (873bp) protein (291aa)
ABC transporter, ATP-binding protein SagG family protein n=65 Tax=Clostridium difficile RepID=G6BUY3_CLODI
ABC transporter, ATP-binding protein SagG family protein {ECO:0000313|EMBL:CDS85035.1}; Abc transporter, atp-binding protein {ECO:0000313|EMBL:CDS89547.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ABC transporter ATP-binding protein
L3_083_088G1_scaffold_38_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2973..3761
DNA (789bp) protein (263aa)
Uncharacterized protein n=83 Tax=Clostridium difficile RepID=G6BUY4_CLODI
Putative membrane protein {ECO:0000313|EMBL:CCL24172.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
hypothetical protein
L3_083_088G1_scaffold_38_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3857..4690)
DNA (834bp) protein (278aa)
Prenyltransferase-like family protein n=2 Tax=Clostridium difficile RepID=T4PDX8_CLODI
Prenyltransferase-like family protein {ECO:0000313|EMBL:EQE59316.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_083_088G1_scaffold_38_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4758..5387)
DNA (630bp) protein (210aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4PE29_CLODI
conserved hypothetical protein
Domain of uncharacterised function (DUF3786) {ECO:0000313|EMBL:CKG77061.1}; Uncharacterized protein {ECO:0000313|EMBL:CEJ99974.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_088G1_scaffold_38_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5698..6357
DNA (660bp) protein (220aa)
Response regulator n=2 Tax=Clostridium difficile RepID=T4P885_CLODI
two-component response regulator
Two-component response regulator {ECO:0000313|EMBL:CAJ70217.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_088G1_scaffold_38_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6568..7626
DNA (1059bp) protein (353aa)
Uncharacterized protein n=182 Tax=Clostridium difficile RepID=G6BAF8_CLODI
hypothetical protein
TIGR00374 family protein {ECO:0000313|EMBL:EQG73774.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_088G1_scaffold_38_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7877..8293
DNA (417bp) protein (139aa)
Formate dehydrogenase h n=6 Tax=Clostridium difficile RepID=C9XRR8_CLODC
fdhF; formate dehydrogenase h
Molybdopterin oxidoreductase family protein {ECO:0000313|EMBL:EQE59318.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_38_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8342..10021
DNA (1680bp) protein (560aa)
fdhF; Formate dehydrogenase-H (selenocysteine) (EC:1.2.1.2)
Formate dehydrogenase h {ECO:0000313|EMBL:CKG77175.1}; EC=1.2.1.2 {ECO:0000313|EMBL:CKG77175.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Formate dehydrogenase-H (Selenocysteine) n=259 Tax=Clostridium difficile RepID=Q180G2_CLOD6
L3_083_088G1_scaffold_38_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10070..10903
DNA (834bp) protein (278aa)
Protein FdhD homolog n=57 Tax=Clostridium difficile RepID=G6BUZ1_CLODI
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
fdhD; formate dehydrogenase accessory protein
L3_083_088G1_scaffold_38_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10872..11087
DNA (216bp) protein (72aa)
Uncharacterized protein n=27 Tax=Clostridium difficile RepID=T2V6Y5_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CDS85053.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
hypothetical protein
L3_083_088G1_scaffold_38_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11145..11696
DNA (552bp) protein (184aa)
4Fe-4S binding domain protein n=129 Tax=Clostridium difficile RepID=C9XRR5_CLODC
hydN2; electron transport protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQE59308.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_38_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11721..13097
DNA (1377bp) protein (459aa)
Iron hydrogenase {ECO:0000313|EMBL:CCK88705.1}; EC=1.12.7.2 {ECO:0000313|EMBL:CCK88705.1};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
Iron hydrogenase n=191 Tax=Clostridium difficile RepID=Q180F8_CLOD6
hydA; hydrogenase
L3_083_088G1_scaffold_38_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13097..13612
DNA (516bp) protein (172aa)
Electron transport protein n=155 Tax=Clostridium difficile RepID=C9XRR3_CLODC
hydN1; electron transport protein
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQG73771.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_088G1_scaffold_38_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13690..14973)
DNA (1284bp) protein (428aa)
Sugar (And other) transporter family protein n=142 Tax=Clostridium difficile RepID=T3G0V2_CLODC
Transporter, Major Facilitator Superfamily(MFS)
Transporter, Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CCL31589.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_088G1_scaffold_38_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15161..15583
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Clostridium difficile RepID=T4P877_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE59300.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
hypothetical protein
L3_083_088G1_scaffold_38_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15685..16623
DNA (939bp) protein (313aa)
Putative D-isomer specific 2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:CCL31587.1}; EC=1.1.1.- {ECO:0000313|EMBL:CCL31587.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
NAD binding domain of 6-phosphogluconate dehydrogenase family protein n=192 Tax=Clostridium difficile RepID=C9XRR0_CLODC
D-isomer specific 2-hydroxyacid dehydrogenase
L3_083_088G1_scaffold_38_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16809..18833
DNA (2025bp) protein (675aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
ligA; DNA ligase (EC:6.5.1.2)
DNA ligase n=13 Tax=Clostridium difficile RepID=DNLJ_CLOD6
L3_083_088G1_scaffold_38_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18993..20342
DNA (1350bp) protein (450aa)
rph; bifunctional tRNA nucleotidyltransferase/nucleoside-triphosphatase (EC:2.7.7.56 3.6.1.15)
Ribonuclease PH {ECO:0000256|SAAS:SAAS00104182}; EC=2.7.7.56 {ECO:0000256|SAAS:SAAS00104188};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Ribonuclease PH n=2 Tax=Clostridium difficile RepID=T4PDW0_CLODI
L3_083_088G1_scaffold_38_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20342..20812
DNA (471bp) protein (157aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Phosphodiesterase, MJ0936 family protein n=112 Tax=Clostridium difficile RepID=C9XRQ7_CLODC
phosphoesterase
L3_083_088G1_scaffold_38_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21006..22292
DNA (1287bp) protein (429aa)
tig; trigger factor (EC:5.2.1.8)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Trigger factor n=2 Tax=Clostridium difficile RepID=T4P871_CLODI
L3_083_088G1_scaffold_38_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22442..23026
DNA (585bp) protein (195aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
ATP-dependent Clp protease proteolytic subunit n=192 Tax=Clostridium difficile RepID=C9XRQ5_CLODC
clpP1; ATP-dependent Clp protease proteolytic subunit
L3_083_088G1_scaffold_38_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23045..24295
DNA (1251bp) protein (417aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=208 Tax=Clostridium difficile RepID=CLPX_CLOD6
clpX; ATP-dependent protease ATP-binding subunit ClpX
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
L3_083_088G1_scaffold_38_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24366..24893)
DNA (528bp) protein (176aa)
Chromate transport protein n=210 Tax=Clostridium difficile RepID=C9XRQ3_CLODC
chromate transport protein
Chromate transporter family protein {ECO:0000313|EMBL:EQG73802.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_088G1_scaffold_38_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24881..25393)
DNA (513bp) protein (171aa)
Chromate transport protein n=204 Tax=Clostridium difficile RepID=C9XRQ2_CLODC
chromate transport protein
Chromate transport protein ChrA {ECO:0000313|EMBL:CCK99791.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_083_088G1_scaffold_38_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25573..27936
DNA (2364bp) protein (788aa)
lon; ATP-dependent protease La, S16 peptidase family (EC:3.4.21.53)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Lon protease n=52 Tax=Clostridium difficile RepID=LON_CLOD6
L3_083_088G1_scaffold_38_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27926..28537
DNA (612bp) protein (204aa)
Probable GTP-binding protein EngB n=221 Tax=Clostridium difficile RepID=ENGB_CLOD6
engB; GTP-binding protein YsxC
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_083_088G1_scaffold_38_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28802..30172)
DNA (1371bp) protein (457aa)
H+ antiporter-2 family protein n=130 Tax=Clostridium difficile RepID=T3G0W0_CLODC
Transporter, Major Facilitator Superfamily(MFS)
H+ antiporter-2 family protein {ECO:0000313|EMBL:EQG73840.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_088G1_scaffold_38_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30750..31829
DNA (1080bp) protein (360aa)
Archaeal ATPase family protein n=186 Tax=Clostridium difficile RepID=T3G1N5_CLODC
putative ATP/GTP-binding protein
Archaeal ATPase family protein {ECO:0000313|EMBL:EQE59278.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_38_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32221..32901
DNA (681bp) protein (227aa)
Uncharacterized protein n=183 Tax=Clostridium difficile RepID=Q180E1_CLOD6
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL31573.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Displaying items 1-30 of 104 in total

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