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L3_083_088G1_scaffold_55

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_55_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1698)
DNA (1698bp) protein (566aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Aconitate hydratase n=3 Tax=Bifidobacterium bifidum RepID=E3ENX4_BIFBS
acn; aconitate hydratase
L3_083_088G1_scaffold_55_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1771..4326)
DNA (2556bp) protein (852aa)
Cation-transporting ATPase n=2 Tax=Bifidobacterium bifidum RepID=K2HB50_BIFBI
Cation-transporting ATPase {ECO:0000313|EMBL:EKE51256.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
ctpE; putative cation-transporting ATPase E
L3_083_088G1_scaffold_55_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4623..5237)
DNA (615bp) protein (205aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V8P7_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49989.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_083_088G1_scaffold_55_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5242..6504)
DNA (1263bp) protein (421aa)
tRNA (Uracil-5-) -methyltransferase (EC:2.1.1.35)
tRNA (Uracil-5-)-methyltransferase n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M1J2_BIFBI
TRAM domain protein {ECO:0000313|EMBL:ERI83086.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ97816.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_088G1_scaffold_55_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6530..7303)
DNA (774bp) protein (258aa)
Conserved hypothetical membrane spanning protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENX0_BIFBS
hypothetical protein
Conserved hypothetical membrane spanning protein {ECO:0000313|EMBL:ADO52845.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_55_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7343..8164)
DNA (822bp) protein (274aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=K2LDA0_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI83084.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_083_088G1_scaffold_55_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8304..9161)
DNA (858bp) protein (286aa)
Putative exodeoxyribonuclease III n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V8P3_BIFBI
xth; Exodeoxyribonuclease III
Putative exodeoxyribonuclease III {ECO:0000313|EMBL:EFR49985.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_088G1_scaffold_55_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9302..10720
DNA (1419bp) protein (473aa)
Bleomycin hydrolase C n=2 Tax=Bifidobacterium bifidum RepID=E3ENW7_BIFBS
pepC1; bleomycin hydrolase C
Aminopeptidase C domain protein {ECO:0000313|EMBL:ERI83082.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_088G1_scaffold_55_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10914..12704)
DNA (1791bp) protein (597aa)
ABC transporter, substrate-binding protein, family 5 n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DTI7_BIFBI
ABC transporter, substrate-binding protein, family 5 {ECO:0000313|EMBL:ERI83081.1}; Dipeptide/oligopeptide ABC transporter substrate binding component {ECO:0000313|EMBL:BAQ97811.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
oppA; oligopeptide-binding protein OppA
L3_083_088G1_scaffold_55_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12868..15084)
DNA (2217bp) protein (739aa)
oppD; oligopeptide transport ATP-binding protein OppD (EC:3.6.3.24)
Putative phosphonate C-P lyase system protein PhnK n=2 Tax=Bifidobacterium bifidum RepID=U2CEW7_BIFBI
OppD Oligopeptide transport ATP-binding protein {ECO:0000313|EMBL:CDB22728.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_55_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15084..16028)
DNA (945bp) protein (315aa)
Putative oligopeptide ABC transporter, permease protein OppC n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BXY4_BIFBI
OppC Oligopeptide transport system permease protein {ECO:0000313|EMBL:KFI42681.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
oppC; oligopeptide transport system permease protein oppC
L3_083_088G1_scaffold_55_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16050..17033)
DNA (984bp) protein (328aa)
Peptide/nickel transport system, permease protein n=7 Tax=Bifidobacterium RepID=E3ENW3_BIFBS
oppB; oligopeptide transport system permease protein OppB
Putative peptide transport permease protein {ECO:0000313|EMBL:EKF15846.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_083_088G1_scaffold_55_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17430..18434)
DNA (1005bp) protein (335aa)
Tyrosine recombinase XerC n=2 Tax=Bifidobacterium bifidum RepID=I3WH23_BIFBI
xerC; tyrosine recombinase
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_55_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18520..18771
DNA (252bp) protein (84aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WH22_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52836.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_55_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18845..19708)
DNA (864bp) protein (288aa)
Prephenate dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENW0_BIFBS
tyrA1; prephenate dehydrogenase
Prephenate dehydrogenase {ECO:0000313|EMBL:ADO52835.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_55_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19876..20907)
DNA (1032bp) protein (344aa)
Chorismate mutase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENV9_BIFBS
chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:ADO52834.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_55_17
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20904..21437)
DNA (534bp) protein (178aa)
Alcohol dehydrogenase class IV n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GN93_9BIFI
Alcohol dehydrogenase class IV {ECO:0000313|EMBL:CDB22721.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
alcohol dehydrogenase
L3_083_088G1_scaffold_55_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22076..23998)
DNA (1923bp) protein (641aa)
typA; GTP-binding protein TypA (EC:2.7.7.4)
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:KFI42674.1}; EC=3.6.5.- {ECO:0000313|EMBL:KFI42674.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
GTP-binding protein TypA/BipA n=7 Tax=Bifidobacterium RepID=E4P0S7_BIFBP
L3_083_088G1_scaffold_55_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24179..25456)
DNA (1278bp) protein (426aa)
iscS; cysteine desulfurase (EC:2.8.1.7)
IscS Cysteine desulfurase n=3 Tax=Bifidobacterium bifidum RepID=E4P0S6_BIFBP
Aminotransferase, class V {ECO:0000313|EMBL:EFR49973.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_088G1_scaffold_55_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25459..26352)
DNA (894bp) protein (298aa)
nadC; nicotinate-nucleotide pyrophosphorylase NadC (EC:2.4.2.19)
NadC Nicotinate-nucleotide pyrophosphorylase n=5 Tax=Bifidobacterium RepID=E4P0S5_BIFBP
NadC Nicotinate-nucleotide pyrophosphorylase {ECO:0000313|EMBL:CDB22717.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_55_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26486..28135)
DNA (1650bp) protein (550aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L-aspartate oxidase n=4 Tax=Bifidobacterium bifidum RepID=E3ENV4_BIFBS
nadB; L-aspartate oxidase
L3_083_088G1_scaffold_55_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28188..29468)
DNA (1281bp) protein (427aa)
nadA; quinolinate synthetase A NadA (EC:2.5.1.72)
Quinolinate synthase A {ECO:0000256|HAMAP-Rule:MF_00569}; EC=2.5.1.72 {ECO:0000256|HAMAP-Rule:MF_00569};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Quinolinate synthase A n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0S3_BIFBP
L3_083_088G1_scaffold_55_23
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29586..30368)
DNA (783bp) protein (261aa)
phosphohydrolase (EC:3.6.1.13)
Phosphohydrolase (MutT/nudix family protein) n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4P0S2_BIFBP
Phosphohydrolase (MutT/nudix family protein) {ECO:0000313|EMBL:CDB22714.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_55_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30572..31144)
DNA (573bp) protein (191aa)
Segregation and condensation protein B n=3 Tax=Bifidobacterium bifidum RepID=E3ENV1_BIFBS
scpB; segregation and condensation protein ScpB
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_088G1_scaffold_55_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31241..32095)
DNA (855bp) protein (285aa)
Segregation and condensation protein A n=3 Tax=Bifidobacterium RepID=I3WH11_BIFBI
scpA; segregation and condensation protein A
Segregation and condensation protein A {ECO:0000313|EMBL:AFL04174.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_088G1_scaffold_55_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32132..33151)
DNA (1020bp) protein (340aa)
Chromosome partitioning protein n=5 Tax=Bifidobacterium bifidum RepID=E3ENU9_BIFBS
chromosome partitioning protein
Chromosome partitioning protein {ECO:0000313|EMBL:ADO52824.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_55_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33213..34181)
DNA (969bp) protein (323aa)
Tyrosine recombinase XerD n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H956_BIFBI
integrase/recombinase
Tyrosine recombinase XerD {ECO:0000256|HAMAP-Rule:MF_01807}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_083_088G1_scaffold_55_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(34330..34713)
DNA (384bp) protein (128aa)
50S ribosomal protein L20 n=8 Tax=Bifidobacterium RepID=E3ENU7_BIFBS
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_083_088G1_scaffold_55_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(34761..34955)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=8 Tax=Bifidobacterium RepID=E3ENU6_BIFBS
rpmI; 50S ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_088G1_scaffold_55_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(34974..35669)
DNA (696bp) protein (232aa)
Translation initiation factor IF-3 n=9 Tax=Bifidobacterium RepID=E3ENU5_BIFBS
infC; protein translation initiation factor 3 (IF-3) InfC
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Displaying items 1-30 of 80 in total

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