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L3_083_088G1_scaffold_61

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_61_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..560)
DNA (558bp) protein (186aa)
Transposase n=1 Tax=Bifidobacterium catenulatum DSM 16992 = JCM 1194 RepID=B6XVI0_9BIFI
Transposase {ECO:0000313|EMBL:BAQ97256.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
transposase
L3_083_088G1_scaffold_61_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

739..1683
DNA (945bp) protein (315aa)
Transposase, Mutator family n=2 Tax=Bifidobacterium RepID=U2DRM7_BIFBI
Putative glycosyltransferase {ECO:0000313|EMBL:BAQ97255.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
wcaA; putative glycosyl transferase
L3_083_088G1_scaffold_61_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1756..4347)
DNA (2592bp) protein (864aa)
lytC; 1,4-beta-N-acetylmuramidase (EC:3.4.24.76)
1,4-beta-N-acetylmuramidase {ECO:0000313|EMBL:AFL03647.1}; EC=3.4.24.76 {ECO:0000313|EMBL:AFL03647.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
1,4-beta-N-acetylmuramidase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFI4_BIFBI
L3_083_088G1_scaffold_61_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4456..5727)
DNA (1272bp) protein (424aa)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
dTDP-glucose 4,6-dehydratase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HRF1_BIFBI
rmlB1; dTDP-glucose 4,6-dehydratase
L3_083_088G1_scaffold_61_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5959..6324)
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VCF6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR51271.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
two-component sensor kinase
L3_083_088G1_scaffold_61_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6312..6932)
DNA (621bp) protein (207aa)
Two-component response regulator n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M5E5_BIFBI
Two-component response regulator {ECO:0000313|EMBL:EKF16270.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
two-component response regulator
L3_083_088G1_scaffold_61_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6955..7170)
DNA (216bp) protein (72aa)
Putative response regulatory protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFI0_BIFBI
putative response regulatory protein
Putative response regulatory protein {ECO:0000313|EMBL:AFL03643.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_088G1_scaffold_61_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7418..7798)
DNA (381bp) protein (127aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WFH9_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52248.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_61_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7939..9036
DNA (1098bp) protein (366aa)
trpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophanyl-tRNA synthetase {ECO:0000313|EMBL:AFL03641.1}; EC=6.1.1.2 {ECO:0000313|EMBL:AFL03641.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Tryptophanyl-tRNA synthetase n=2 Tax=Bifidobacterium bifidum RepID=I3WFH8_BIFBI
L3_083_088G1_scaffold_61_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9512..10531)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2MGG5_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKF16267.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_083_088G1_scaffold_61_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11090..11314
DNA (225bp) protein (75aa)
Putative metal-dependent hydrolase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFH6_BIFBI
putative metal-dependent hydrolase
Putative metal-dependent hydrolase {ECO:0000313|EMBL:AFL03639.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_088G1_scaffold_61_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11391..12200
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Bifidobacterium bifidum RepID=UPI0003183F80
Amidohydrolase family protein {ECO:0000313|EMBL:EFR51266.1}; Flags: Fragment;; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
putative metal-dependent hydrolase
L3_083_088G1_scaffold_61_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12273..14282)
DNA (2010bp) protein (670aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CJL2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI84233.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_083_088G1_scaffold_61_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

14693..17449
DNA (2757bp) protein (919aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|SAAS:SAAS00018769}; EC=4.1.1.31 {ECO:0000256|SAAS:SAAS00018769};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
ppc; phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFH3_BIFBI
L3_083_088G1_scaffold_61_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17947..18333
DNA (387bp) protein (129aa)
Major facilitator superfamily MFS 1 n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENG4_BIFBS
major facilitator superfamily MFS 1
Inner membrane protein {ECO:0000313|EMBL:AFL03635.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_088G1_scaffold_61_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18412..19233
DNA (822bp) protein (274aa)
Transporter, major facilitator family protein n=3 Tax=Bifidobacterium bifidum RepID=E4VCE7_BIFBI
Inner membrane protein {ECO:0000313|EMBL:EKE50330.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Permease MFS superfamily
L3_083_088G1_scaffold_61_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19526..21439)
DNA (1914bp) protein (638aa)
trxB; TrxB Thioredoxin reductase/Thioredoxin/glutaredoxin family protein (EC:1.8.1.9)
Putative alkyl hydroperoxide reductase F subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VCE5_BIFBI
Putative alkyl hydroperoxide reductase F subunit {ECO:0000313|EMBL:EFR51260.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_088G1_scaffold_61_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(21782..22345)
DNA (564bp) protein (188aa)
ahpC; peroxiredoxin (EC:1.11.1.15)
Peroxiredoxin {ECO:0000313|EMBL:EFR51259.1}; EC=1.11.1.15 {ECO:0000313|EMBL:EFR51259.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Alkyl hydroperoxide reductase C22 protein n=8 Tax=Bifidobacterium RepID=E3ENG1_BIFBS
L3_083_088G1_scaffold_61_19
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22562..23311
DNA (750bp) protein (250aa)
cynT; carbonic anhydrase (EC:4.2.1.1)
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
Carbonic anhydrase n=6 Tax=Bifidobacterium RepID=I3WFG8_BIFBI
L3_083_088G1_scaffold_61_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23428..24003
DNA (576bp) protein (192aa)
Transcriptional regulator, LacI family n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4VCE2_BIFBI
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EFR51257.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
LacI family transcriptional regulator
L3_083_088G1_scaffold_61_21
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24212..25534
DNA (1323bp) protein (441aa)
Conserved hypothetical membrane spanning protein with DUF21 and CBS domains n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GDA5_9BIFI
Conserved hypothetical membrane spanning protein with DUF21 and CBS domains {ECO:0000313|EMBL:CDB22350.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
putative transport protein
L3_083_088G1_scaffold_61_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25570..26643)
DNA (1074bp) protein (358aa)
Inner membrane protein n=4 Tax=Bifidobacterium bifidum RepID=I3WFG5_BIFBI
yddG; inner membrane protein
Membrane spanning protein {ECO:0000313|EMBL:KFI42153.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_083_088G1_scaffold_61_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27085..27564
DNA (480bp) protein (160aa)
DNA-binding ferritin-like protein for protection from oxidative damage, Dps family protein n=7 Tax=Bifidobacterium RepID=E3ENF6_BIFBS
dps; DNA protection during starvation protein
Ferritin-like protein {ECO:0000313|EMBL:EFR51254.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_088G1_scaffold_61_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27751..28419)
DNA (669bp) protein (223aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VCD8_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFR51253.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_088G1_scaffold_61_25
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28774..30291)
DNA (1518bp) protein (506aa)
PTS system, ascorbate-specific IIC componet n=3 Tax=Bifidobacterium RepID=E3ENF4_BIFBS
PTS system, ascorbate-specific IIC componet
PTS system ascorbate-specific IIC componet {ECO:0000313|EMBL:CDB22354.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_61_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30357..30629)
DNA (273bp) protein (91aa)
PTS system lactose/cellobiose specific transporter subunit IIB (EC:2.7.1.69)
PTS system, ascorbate-specific IIB component n=4 Tax=Bifidobacterium bifidum RepID=E3ENF3_BIFBS
PTS system lactose/cellobiose-specific transporter subunit IIB {ECO:0000313|EMBL:EKE50340.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_083_088G1_scaffold_61_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30753..31202)
DNA (450bp) protein (150aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DRP8_BIFBI
PTS system ascorbate-specific transporter subunit IIA
PTS system, ascorbate-specific IIA component {ECO:0000313|EMBL:ADO52230.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_61_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31532..32584
DNA (1053bp) protein (351aa)
Transcriptional regulator, LacI family n=2 Tax=Bifidobacterium RepID=E3ENF1_BIFBS
LacI family transcriptional regulator
Transcriptional regulator LacI family {ECO:0000313|EMBL:CDB22357.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_61_29
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32800..33150
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GA95_9BIFI
Uncharacterized protein {ECO:0000313|EMBL:CDB22358.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_61_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(33057..35393)
DNA (2337bp) protein (779aa)
Glycoside hydrolase, family 20 n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ENF0_BIFBS
glycoside hydrolase family protein
Glycoside hydrolase, family 20 {ECO:0000313|EMBL:ADO52228.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Displaying items 1-30 of 70 in total

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