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L3_083_088G1_scaffold_99

Search features with annotation key words

Displaying items 1-30 of 60 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_99_1
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..275
DNA (273bp) protein (91aa)
Putative ribosome biogenesis GTPase RsgA {ECO:0000256|HAMAP-Rule:MF_01820}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_01820};; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
ribosome small subunit-dependent GTPase A (EC:3.6.1.-)
Putative ribosome biogenesis GTPase RsgA n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Y2Y1_9FIRM
L3_083_088G1_scaffold_99_2
Lachnospiraceae bacterium 6_1_37FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

277..939
DNA (663bp) protein (221aa)
Ribulose-phosphate 3-epimerase {ECO:0000256|PIRNR:PIRNR001461}; EC=5.1.3.1 {ECO:0000256|PIRNR:PIRNR001461};; TaxID=658656 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 6_1_37FAA.;"
Ribulose-phosphate 3-epimerase n=4 Tax=Lachnospiraceae RepID=E9RVV5_9FIRM
ribulose-phosphate 3-epimerase
L3_083_088G1_scaffold_99_3
Coprococcus sp. HPP0074, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

932..1600
DNA (669bp) protein (223aa)
thiamine diphosphokinase (EC:2.7.6.2)
Thiamine pyrophosphokinase n=1 Tax=Coprococcus sp. HPP0074 RepID=S2Z390_9FIRM
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EPD58564.1}; TaxID=1078090 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. HPP0074.;"
L3_083_088G1_scaffold_99_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1801..2139)
DNA (339bp) protein (113aa)
Uncharacterized protein n=193 Tax=Clostridium difficile RepID=C9XMM4_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCK98919.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_083_088G1_scaffold_99_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2388..3704)
DNA (1317bp) protein (439aa)
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
argininosuccinate lyase (EC:4.3.2.1)
Argininosuccinate lyase n=47 Tax=Clostridium difficile RepID=T2VN13_CLODI
L3_083_088G1_scaffold_99_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4081..4902)
DNA (822bp) protein (274aa)
HAD hydrolase, IIB family protein n=2 Tax=Clostridium difficile RepID=T4PJ54_CLODI
hydrolase
Cof-like hydrolase family protein {ECO:0000313|EMBL:EQH98708.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_083_088G1_scaffold_99_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5263..6366
DNA (1104bp) protein (368aa)
Aminotransferase class-V family protein n=116 Tax=Clostridium difficile RepID=T3GI38_CLODC
Putative pyridoxal phosphate-dependent transferase {ECO:0000313|EMBL:CCL22840.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative pyridoxal phosphate-dependenttransferase
L3_083_088G1_scaffold_99_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6424..9063)
DNA (2640bp) protein (880aa)
Calcium-transporting ATPase n=2 Tax=Clostridium difficile RepID=T4PCB1_CLODI
Cation-transporting ATPase {ECO:0000313|EMBL:CBE05685.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
cation-transporting ATPase
L3_083_088G1_scaffold_99_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9387..10034)
DNA (648bp) protein (216aa)
Putative D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CCL30742.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CCL30742.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
D-alanyl-D-alanine carboxypeptidase family protein n=182 Tax=Clostridium difficile RepID=C9XMM9_CLODC
putative D-alanyl-D-alanine carboxypeptidase
L3_083_088G1_scaffold_99_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10313..11203
DNA (891bp) protein (297aa)
Bacterial regulatory s, tetR family protein n=1 Tax=Clostridium difficile P42 RepID=T4PI36_CLODI
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:EQG75501.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Transcriptional regulator, TetR family
L3_083_088G1_scaffold_99_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11207..12607
DNA (1401bp) protein (467aa)
H+ antiporter-2 family protein n=149 Tax=Clostridium difficile RepID=T3GDR8_CLODC
transporter
Transporter, Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CCL22844.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_083_088G1_scaffold_99_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12731..13450)
DNA (720bp) protein (240aa)
Transglutaminase-like superfamily protein n=2 Tax=Clostridium difficile RepID=T4PIG1_CLODI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL22845.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_083_088G1_scaffold_99_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13497..14285)
DNA (789bp) protein (263aa)
AraC-family transcriptional regulator n=15 Tax=Clostridium difficile RepID=C9XMN3_CLODC
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EHJ25333.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_083_088G1_scaffold_99_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14386..15738)
DNA (1353bp) protein (451aa)
6-phospho-alpha-glucosidase {ECO:0000313|EMBL:CDS88780.1}; EC=3.2.1.122 {ECO:0000313|EMBL:CDS88780.1};; Putative glycoside hydrolase, family 4 {ECO:0000313|EMBL:CDS85267.1}; EC=3.2.1.- {ECO:0000313|EMBL:CDS85267.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
glycoside hydrolase (EC:3.2.1.-)
6-phospho-alpha-glucosidase n=49 Tax=Clostridium difficile RepID=T2THR1_CLODI
L3_083_088G1_scaffold_99_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15835..17385)
DNA (1551bp) protein (517aa)
PTS system transporter subunit IIBC {ECO:0000313|EMBL:CKH34875.1}; PTS system, glucose-like IIBC component {ECO:0000313|EMBL:CEJ99131.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CEJ99131.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
PTS system, glucose-like IIBC component n=58 Tax=Clostridium difficile RepID=Q182J8_CLOD6
PTS system transporter subunit IIBC
L3_083_088G1_scaffold_99_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17436..18251)
DNA (816bp) protein (272aa)
PRD domain protein n=192 Tax=Clostridium difficile RepID=C9XMN6_CLODC
transcriptional antiterminator
PRD domain protein {ECO:0000313|EMBL:EHJ25336.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
L3_083_088G1_scaffold_99_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18272..18754)
DNA (483bp) protein (161aa)
PTS system, glucose-like IIA component {ECO:0000313|EMBL:CCL30750.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCL30750.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
PTS system, IIa component n=21 Tax=Clostridium difficile RepID=C9XMN7_CLODC
PTS system transporter subunit IIA
L3_083_088G1_scaffold_99_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19038..19418)
DNA (381bp) protein (127aa)
Translation initiation inhibitor n=222 Tax=Clostridium difficile RepID=T2TEN0_CLODI
translation inhibitor endoribonuclease
Translation initiation inhibitor {ECO:0000313|EMBL:EQE61018.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_99_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19513..20730)
DNA (1218bp) protein (406aa)
Threonine dehydratase II {ECO:0000313|EMBL:CCL30752.1}; EC=4.3.1.19 {ECO:0000313|EMBL:CCL30752.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Threonine ammonia-lyase n=197 Tax=Clostridium difficile RepID=C9XMN9_CLODC
tdcB; threonine dehydratase catabolic
L3_083_088G1_scaffold_99_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21389..23017
DNA (1629bp) protein (543aa)
putative L-aspartate-beta-decarboxylase (EC:2.6.1.1)
Aspartate aminotransferase {ECO:0000313|EMBL:CKH35082.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CKH35082.1};; Bifunctional aspartate aminotransferase and L-aspartate beta-decarboxylase {ECO:0000313|EMBL:CDS88794.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDS88794.1};; EC=4.1.1.12 {ECO:0000313|EMBL:CDS88794.1};; Putative L-aspartate-beta-decarboxylase {ECO:0000313|EMBL:CDS85254.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDS85254.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Aspartate 4-decarboxylase n=154 Tax=Clostridium difficile RepID=T3GG97_CLODC
L3_083_088G1_scaffold_99_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23138..24133
DNA (996bp) protein (332aa)
ansB; L-asparaginase (EC:3.5.1.1)
Asparaginase family protein n=207 Tax=Clostridium difficile RepID=T3GEL6_CLODC
Asparaginase family protein {ECO:0000313|EMBL:EQE60821.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_99_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24311..24694)
DNA (384bp) protein (128aa)
Penicillinase repressor family protein n=2 Tax=Clostridium difficile RepID=T4PIG9_CLODI
beta-lactams repressor
Transcriptional regulator, beta-lactams repressor {ECO:0000313|EMBL:CAJ69403.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_088G1_scaffold_99_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25804..25962)
DNA (159bp) protein (53aa)
Uncharacterized protein n=97 Tax=Clostridium difficile RepID=G6C045_CLODI
putative phage protein
Putative phage protein {ECO:0000313|EMBL:CDS88387.1}; Uncharacterised protein {ECO:0000313|EMBL:CKH35199.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_088G1_scaffold_99_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26321..27691)
DNA (1371bp) protein (457aa)
Cell wall binding repeat 2 family protein n=2 Tax=Clostridium difficile RepID=T4PM17_CLODI
Cell wall binding repeat 2 family protein {ECO:0000313|EMBL:EQE60798.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
cwp29; Cell surface protein cwp29
L3_083_088G1_scaffold_99_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28403..28933
DNA (531bp) protein (177aa)
Integrase n=3 Tax=Clostridium difficile RepID=Q182K7_CLOD6
Integrase
Integrase {ECO:0000313|EMBL:CEJ99141.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_088G1_scaffold_99_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29416..30084)
DNA (669bp) protein (223aa)
VanZ like family protein n=104 Tax=Clostridium difficile RepID=T2TCD8_CLODI
Putative conjugative transposon antibiotic resistance protein {ECO:0000313|EMBL:CCL22858.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
putative conjugative transposon antibioticresistance protein
L3_083_088G1_scaffold_99_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30938..33358)
DNA (2421bp) protein (807aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
Leucine--tRNA ligase n=146 Tax=Clostridium difficile RepID=SYL_CLOD6
leuS; leucyl-tRNA synthetase
L3_083_088G1_scaffold_99_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33712..34062)
DNA (351bp) protein (117aa)
Ribosomal silencing factor RsfS n=214 Tax=Clostridium difficile RepID=C9XMP4_CLODC
hypothetical protein
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_088G1_scaffold_99_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34179..34751)
DNA (573bp) protein (191aa)
Uncharacterized protein n=202 Tax=Clostridium difficile RepID=T3GG84_CLODC
hydrolase
Uncharacterized protein {ECO:0000313|EMBL:EQE60789.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_99_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34752..35441)
DNA (690bp) protein (230aa)
Probable nicotinate-nucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; EC=2.7.7.18 {ECO:0000256|HAMAP-Rule:MF_00244};; Deamido-NAD(+) diphosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Deamido-NAD(+) pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00244}; Nicotinate mononucleotide adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00244}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Probable nicotinate-nucleotide adenylyltransferase n=2 Tax=Clostridium difficile RepID=T4PME8_CLODI
nicotinate-nucleotide adenylyltransferase
Displaying items 1-30 of 60 in total

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