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L3_083_088G1_scaffold_180

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_180_1
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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109..540
DNA (432bp) protein (144aa)
YigE protein n=1 Tax=Escherichia coli B354 RepID=D6JHD0_ECOLX
YigE protein {ECO:0000313|EMBL:EFF10702.2}; TaxID=550677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B354.;"
yigE; hypothetical protein
L3_083_088G1_scaffold_180_2
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

623..1525
DNA (903bp) protein (301aa)
Uncharacterized protein n=36 Tax=Escherichia coli RepID=B1LLY5_ECOSM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDK46349.1}; TaxID=1433131 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli IS1.;"
L3_083_088G1_scaffold_180_3
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1570..3732)
DNA (2163bp) protein (721aa)
uvrD; DNA helicase II (EC:3.6.1.-)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=364106 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli (strain UTI89 / UPEC).;"
DNA helicase II n=5 Tax=Escherichia RepID=Q1R4C1_ECOUT
L3_083_088G1_scaffold_180_4
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3816..4532)
DNA (717bp) protein (239aa)
Flavin mononucleotide phosphatase YigB n=767 Tax=Enterobacteriaceae RepID=YIGB_ECOLI
yigB; flavin mononucleotide phosphatase
HAD hydrolase, IA, variant 1 family protein {ECO:0000313|EMBL:KDW81283.1}; TaxID=1444081 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 1-392-07_S1_C2.;"
L3_083_088G1_scaffold_180_5
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4532..5428)
DNA (897bp) protein (299aa)
Tyrosine recombinase XerC n=4 Tax=Escherichia coli RepID=F7N3C7_ECOLX
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
xerC; site-specific tyrosine recombinase XerC
L3_083_088G1_scaffold_180_6
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5425..6132)
DNA (708bp) protein (236aa)
Uncharacterized protein n=7 Tax=Escherichia coli RepID=L3NRA7_ECOLX
Putative uncharacterized protein {ECO:0000313|EMBL:EFF10697.2}; TaxID=550677 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli B354.;"
hypothetical protein
L3_083_088G1_scaffold_180_7
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6129..6953)
DNA (825bp) protein (275aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1417796 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli LAU-EC10.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=13 Tax=Escherichia coli RepID=L3IW58_ECOLX
L3_083_088G1_scaffold_180_8
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6990..7193)
DNA (204bp) protein (68aa)
Lipoprotein n=9 Tax=Escherichia coli RepID=L3NT06_ECOLX
Putative outer membrane lipoprotein {ECO:0000313|EMBL:EGI48443.1}; TaxID=656393 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli H299.;"
hypothetical protein
L3_083_088G1_scaffold_180_9
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7663..7983
DNA (321bp) protein (107aa)
Protein CyaY n=760 Tax=Enterobacteriaceae RepID=CYAY_ECO24
cyaY; frataxin-like protein
Protein CyaY {ECO:0000256|HAMAP-Rule:MF_00142, ECO:0000256|SAAS:SAAS00020372}; TaxID=1446704 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O174:H8 str. 04-3038.;"
L3_083_088G1_scaffold_180_10
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8023..10569)
DNA (2547bp) protein (849aa)
Adenylate cyclase {ECO:0000256|RuleBase:RU000604}; EC=4.6.1.1 {ECO:0000256|RuleBase:RU000604};; TaxID=869686 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 9.0111.;"
cyaA; adenylate cyclase (EC:4.6.1.1)
Adenylate cyclase n=451 Tax=Enterobacteriaceae RepID=CYAA_ECO57
L3_083_088G1_scaffold_180_11
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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10935..11897
DNA (963bp) protein (321aa)
hemC; porphobilinogen deaminase (EC:2.5.1.61)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1268975 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 110957.;"
Porphobilinogen deaminase n=19 Tax=Escherichia coli RepID=D8ADV8_ECOLX
L3_083_088G1_scaffold_180_12

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11894..12634
DNA (741bp) protein (247aa)
hemD; uroporphyrinogen III synthase (EC:4.2.1.75)
Uroporphyrinogen-III synthase n=1 Tax=Escherichia coli KTE147 RepID=L4JE42_ECOLX
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:ETJ17615.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_083_088G1_scaffold_180_13
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12656..13867
DNA (1212bp) protein (404aa)
hemX; putative uroporphyrinogen III C-methyltransferase (EC:2.1.1.107)
Uroporphyrinogen III methylase n=1 Tax=Escherichia coli KTE147 RepID=L4JD53_ECOLX
Putative uroporphyrinogen-III C-methyltransferase {ECO:0000313|EMBL:KEJ71638.1}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
L3_083_088G1_scaffold_180_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13870..15066
DNA (1197bp) protein (399aa)
putative protoheme IX biogenesis protein (EC:1.3.3.4)
HemY protein n=23 Tax=Escherichia coli RepID=D7ZK24_ECOLX
Protein hemY {ECO:0000313|EMBL:EQO55848.1}; TaxID=1280991 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli HVH 41 (4-2677849).;"
L3_083_088G1_scaffold_180_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15745..17400
DNA (1656bp) protein (552aa)
aslA; arylsulfatase (EC:3.1.6.1)
Arylsulfatase n=2 Tax=Escherichia coli KTE147 RepID=L4JEB2_ECOLX
Type I phosphodiesterase / nucleotide pyrophosphatase family protein {ECO:0000313|EMBL:KEL67891.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
L3_083_088G1_scaffold_180_16
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17502..18737)
DNA (1236bp) protein (412aa)
Anaerobic sulfatase maturase {ECO:0000313|EMBL:KEL67892.1}; EC=1.1.99.- {ECO:0000313|EMBL:KEL67892.1};; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
Anaerobic sulfatase maturase n=1 Tax=Escherichia coli KTE147 RepID=L4JD31_ECOLX
aslB; regulator of arylsulfatase activity
L3_083_088G1_scaffold_180_17
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19423..20808)
DNA (1386bp) protein (462aa)
Transport protein n=18 Tax=Escherichia coli RepID=F7N3B5_ECOLX
Amino acid permease {ECO:0000313|EMBL:EIH11828.1}; TaxID=869672 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 97.0259.;"
transporter YifK
L3_083_088G1_scaffold_180_18
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(20999..21739)
DNA (741bp) protein (247aa)
UDP-N-acetyl-D-mannosaminuronic acid transferase {ECO:0000256|HAMAP-Rule:MF_01001, ECO:0000256|SAAS:SAAS00014171}; Short=UDP-ManNAcA transferase {ECO:0000256|HAMAP-Rule:MF_01001};; EC=2.4.1.180 {ECO:0000256|HAMAP-Rule:MF_01001, ECO:0000256|SAAS:SAAS00014176};; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
UDP-N-acetyl-D-mannosaminuronic acid transferase n=1 Tax=Escherichia coli KTE147 RepID=L4JD40_ECOLX
wecG; Putative UDP-N-acetyl-D-mannosaminuronic acid transferase
L3_083_088G1_scaffold_180_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21742..23094)
DNA (1353bp) protein (451aa)
Putative ECA polymerase n=188 Tax=Enterobacteriaceae RepID=WZYE_ECO8A
wzyE; putative common antigen polymerase
Probable ECA polymerase {ECO:0000256|HAMAP-Rule:MF_01003, ECO:0000256|SAAS:SAAS00275810}; TaxID=1116066 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli P0301867.1.;"
L3_083_088G1_scaffold_180_20
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23091..24170)
DNA (1080bp) protein (360aa)
TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase {ECO:0000256|HAMAP-Rule:MF_01002, ECO:0000256|SAAS:SAAS00151893}; EC=2.4.1.325 {ECO:0000256|HAMAP-Rule:MF_01002, ECO:0000256|SAAS:SAAS00151892};; 4-alpha-L-fucosyltransferase {ECO:0000256|HAMAP-Rule:MF_01002}; TDP-Fuc4NAc:lipid II Fuc4NAc transferase {ECO:0000256|HAMAP-Rule:MF_01002}; TaxID=1444102 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C3.;"
4-alpha-L-fucosyltransferase (EC:2.4.1.-)
4-alpha-L-fucosyltransferase n=1 Tax=Escherichia coli KTE147 RepID=L4JE95_ECOLX
L3_083_088G1_scaffold_180_21
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24167..25417)
DNA (1251bp) protein (417aa)
Protein WzxE n=344 Tax=Enterobacteriaceae RepID=WZXE_ECOLI
O-antigen translocase
Protein wzxE {ECO:0000313|EMBL:KEJ54433.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
L3_083_088G1_scaffold_180_22
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25419..26549)
DNA (1131bp) protein (377aa)
TDP-4-oxo-6-deoxy-D-glucose transaminase n=358 Tax=Enterobacteriaceae RepID=B7L8D3_ECO55
TDP-4-oxo-6-deoxy-D-glucose transaminase
dTDP-4-amino-4,6-dideoxy-D-glucose transaminase {ECO:0000313|EMBL:ESA86912.1}; TaxID=1268986 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 907713.;"
L3_083_088G1_scaffold_180_23
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26554..27228)
DNA (675bp) protein (225aa)
TDP-D-fucosamine acetyltransferase n=1 Tax=Escherichia coli KTE147 RepID=L4JD35_ECOLX
TDP-D-fucosamine acetyltransferase {ECO:0000313|EMBL:KEL67899.1}; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
rffC; TDP-fucosamine acetyl transferase RffC
L3_083_088G1_scaffold_180_24
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(27206..28087)
DNA (882bp) protein (294aa)
Glucose-1-phosphate thymidylyltransferase {ECO:0000256|RuleBase:RU003706}; EC=2.7.7.24 {ECO:0000256|RuleBase:RU003706};; TaxID=656419 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli M718.;"
Glucose-1-phosphate thymidylyltransferase 2 n=816 Tax=Enterobacteriaceae RepID=RMLA2_ECOLI
glucose-1-phosphate thymidylyltransferase
L3_083_088G1_scaffold_180_25
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(28106..29173)
DNA (1068bp) protein (356aa)
rfbB2; dTDP-glucose 4,6-dehydratase (EC:4.2.1.46)
dTDP-glucose 4,6-dehydratase {ECO:0000256|RuleBase:RU004473}; EC=4.2.1.46 {ECO:0000256|RuleBase:RU004473};; TaxID=1268995 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 908525.;"
dTDP-glucose 4,6-dehydratase n=5 Tax=Escherichia coli RepID=B1LLW1_ECOSM
L3_083_088G1_scaffold_180_26

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comp(29173..30435)
DNA (1263bp) protein (421aa)
UDP-N-acetyl-D-mannosamine dehydrogenase n=1 Tax=Escherichia coli KTE147 RepID=L4JD01_ECOLX
UDP-N-acetyl-D-mannosamine dehydrogenase {ECO:0000313|EMBL:ETJ17730.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
rffD; UDP-N-acetyl-D-mannosamine dehydrogenase
L3_083_088G1_scaffold_180_27
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30432..31562)
DNA (1131bp) protein (377aa)
UDP-N-acetylglucosamine 2-epimerase {ECO:0000313|EMBL:KEL67903.1}; EC=5.1.3.14 {ECO:0000313|EMBL:KEL67903.1};; TaxID=1444047 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-366-08_S1_C1.;"
UDP-N-acetylglucosamine 2-epimerase n=1 Tax=Escherichia coli KTE147 RepID=L4JE15_ECOLX
rffE; UDP-N-acetyl glucosamine-2-epimerase RffE
L3_083_088G1_scaffold_180_28
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31618..32664)
DNA (1047bp) protein (349aa)
Lipopolysaccharide biosynthesis protein WzzE n=658 Tax=Enterobacteriaceae RepID=WZZE_ECO57
wzzE; Entobacterial Common Antigen (ECA) polysaccharide chain length modulation protein
Lipopolysaccharide biosynthesis protein WzzE {ECO:0000313|EMBL:EZD88942.1}; TaxID=1446698 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O157:NM str. 08-4540.;"
L3_083_088G1_scaffold_180_29
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32676..33779)
DNA (1104bp) protein (368aa)
UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase {ECO:0000313|EMBL:CEK07792.1}; EC=2.4.1.- {ECO:0000313|EMBL:CEK07792.1};; TaxID=244319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli O26:H11.;"
Undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase n=4 Tax=Escherichia coli RepID=H5BYG0_ECOLX
rfe; Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase
L3_083_088G1_scaffold_180_30
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34007..35266)
DNA (1260bp) protein (420aa)
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=1127356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 4_1_47FAA.;"
Transcription termination factor Rho n=1427 Tax=Enterobacteriaceae RepID=RHO_ECO57
rho; transcription termination factor
Displaying items 1-30 of 45 in total

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