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L3_083_088G1_scaffold_197

Search features with annotation key words

Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_197_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..429
DNA (429bp) protein (143aa)
glyQ; glycyl-tRNA synthetase subunit alpha (EC:6.1.1.14)
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Glycine--tRNA ligase alpha subunit n=1 Tax=Clostridium difficile P8 RepID=T4JSR2_CLODI
L3_083_088G1_scaffold_197_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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429..2495
DNA (2067bp) protein (689aa)
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Glycine--tRNA ligase beta subunit n=2 Tax=Clostridium difficile RepID=T4PHZ9_CLODI
glyS; glycyl-tRNA synthetase subunit beta
L3_083_088G1_scaffold_197_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2661..4208)
DNA (1548bp) protein (516aa)
Nitrite/sulfite reductase {ECO:0000313|EMBL:CKH32105.1}; EC=1.8.7.1 {ECO:0000313|EMBL:CKH32105.1};; Putative nitrite/sulphite reductase {ECO:0000313|EMBL:CDS85417.1}; EC=1.8.1.2 {ECO:0000313|EMBL:CDS85417.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
Nitrite/Sulfite reductase ferredoxin-like half domain protein n=137 Tax=Clostridium difficile RepID=C9XLL4_CLODC
nitrite/sulfite reductase
L3_083_088G1_scaffold_197_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4488..5255
DNA (768bp) protein (256aa)
Bacterial transcriptional regulator family protein n=218 Tax=Clostridium difficile RepID=C9XLL3_CLODC
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:CCL30665.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_088G1_scaffold_197_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5538..5735
DNA (198bp) protein (66aa)
4Fe-4S binding domain protein n=216 Tax=Clostridium difficile RepID=D5Q2L9_CLODI
oxidoreductase ferredoxin subunit
4Fe-4S binding domain protein {ECO:0000313|EMBL:EQG75803.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_088G1_scaffold_197_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5764..6840
DNA (1077bp) protein (359aa)
Putative flavodoxin/ferredoxin oxidoreductase alpha subunit {ECO:0000313|EMBL:CCL22762.1}; EC=1.2.7.- {ECO:0000313|EMBL:CCL22762.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-binding domain protein n=213 Tax=Clostridium difficile RepID=D5Q2M0_CLODI
oxidoreductase subunit
L3_083_088G1_scaffold_197_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6843..7562
DNA (720bp) protein (240aa)
Putative flavodoxin/ferredoxin oxidoreductase beta subunit {ECO:0000313|EMBL:CCL30662.1}; EC=1.2.7.- {ECO:0000313|EMBL:CCL30662.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
Thiamine pyrophosphate enzyme, TPP binding domain protein n=205 Tax=Clostridium difficile RepID=G6BZH1_CLODI
oxidoreductase subunit
L3_083_088G1_scaffold_197_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7575..8114
DNA (540bp) protein (180aa)
Putative flavodoxin/ferredoxin oxidoreductase gamma subunit {ECO:0000313|EMBL:CCL22760.1}; EC=1.2.7.- {ECO:0000313|EMBL:CCL22760.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
2-oxoacid:ferredoxin/flavodoxin oxidoreductase, gamma subunit n=195 Tax=Clostridium difficile RepID=G6BCT4_CLODI
oxidoreductase subunit
L3_083_088G1_scaffold_197_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8271..9329
DNA (1059bp) protein (353aa)
butyrate kinase (EC:2.7.2.7)
Probable butyrate kinase {ECO:0000256|HAMAP-Rule:MF_00542}; Short=BK {ECO:0000256|HAMAP-Rule:MF_00542};; EC=2.7.2.7 {ECO:0000256|HAMAP-Rule:MF_00542};; Branched-chain carboxylic acid kinase {ECO:0000256|HAMAP-Rule:MF_00542}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Probable butyrate kinase n=170 Tax=Clostridium difficile RepID=C9XLK8_CLODC
L3_083_088G1_scaffold_197_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9347..10240
DNA (894bp) protein (298aa)
Phosphate butyryltransferase n=173 Tax=Clostridium difficile RepID=C9XLK7_CLODC
phosphate butyryltransferase
Phosphate acetyl/butaryl transferase family protein {ECO:0000313|EMBL:EQE61012.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_197_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10270..11478
DNA (1209bp) protein (403aa)
putative pyridoxal phosphate-dependenttransferase (EC:2.6.1.-)
Uncharacterized protein n=3 Tax=Clostridium difficile RepID=T2Y393_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EQE60933.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_197_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11502..12761
DNA (1260bp) protein (420aa)
Transporter, Major Facilitator Superfamily (MFS) n=164 Tax=Clostridium difficile RepID=Q182A7_CLOD6
Transporter, Major Facilitator Superfamily(MFS)
Transporter, Major Facilitator Superfamily (MFS) {ECO:0000313|EMBL:CCL22756.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_083_088G1_scaffold_197_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13406..14869
DNA (1464bp) protein (488aa)
Sodium:alanine symporter n=80 Tax=Clostridium difficile RepID=Q182A8_CLOD6
Sodium:alanine symporter
Sodium/proton-dependent alanine carrier protein {ECO:0000313|EMBL:CKH31797.1}; Sodium:alanine symporter {ECO:0000313|EMBL:CEJ99040.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_088G1_scaffold_197_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14925..16061
DNA (1137bp) protein (379aa)
Amidohydrolase family protein n=198 Tax=Clostridium difficile RepID=C9XLK3_CLODC
peptidase
Amidohydrolase family protein {ECO:0000313|EMBL:EQE60917.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_197_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16297..17412
DNA (1116bp) protein (372aa)
6-aminopenicillanic acid acyl-transferase family protein n=2 Tax=Clostridium difficile RepID=T4PIX3_CLODI
conserved hypothetical protein
6-aminopenicillanic acid acyl-transferase family protein {ECO:0000313|EMBL:EQI81008.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
L3_083_088G1_scaffold_197_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17564..18433
DNA (870bp) protein (290aa)
Bacterial regulatory helix-turn-helix s, AraC family protein n=57 Tax=Clostridium difficile RepID=T3GED5_CLODC
AraC-family transcriptional regulator
Bacterial regulatory helix-turn-helix s, AraC family protein {ECO:0000313|EMBL:EQH98623.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_083_088G1_scaffold_197_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18809..19354
DNA (546bp) protein (182aa)
Glucitol/sorbitol permease IIC component n=206 Tax=Clostridium difficile RepID=C9XLK0_CLODC
PTS system glucitol/sorbitol-specific transporter subunit IIC2
Glucitol/sorbitol-specific enzyme IIC component of PTS {ECO:0000313|EMBL:CDS87968.1}; PTS system glucitol/sorbitol-specific transporter subunit IIC2 {ECO:0000313|EMBL:CKH31677.1}; PTS system, Sorbitol-like IIC component (Glucitol) {ECO:0000313|EMBL:CDT34810.1}; PTS system, Sorbitol-like IIC component(Glucitol) {ECO:0000313|EMBL:CEJ99036.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_088G1_scaffold_197_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19367..20380
DNA (1014bp) protein (338aa)
Glucitol/sorbitol-specific enzyme IIB component of PTS {ECO:0000313|EMBL:CDS87965.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDS87965.1};; PTS system glucitol/sorbitol-specific transporter subunit IIBC {ECO:0000313|EMBL:CKH31641.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CKH31641.1};; PTS system, Sorbitol-like IIB component (Glucitol) {ECO:0000313|EMBL:CDS85446.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CDS85446.1};; PTS system, Sorbitol-like IIB component(Glucitol) {ECO:0000313|EMBL:CEJ99035.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CEJ99035.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
PTS system, glucitol/sorbitol-specific IIbc component n=197 Tax=Clostridium difficile RepID=C9XLJ9_CLODC
srlE; PTS system glucitol/sorbitol-specific transporter subunit IIBC
L3_083_088G1_scaffold_197_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20602..22575
DNA (1974bp) protein (658aa)
Transcription antiterminator, PTS operon regulator n=119 Tax=Clostridium difficile RepID=Q181Z9_CLOD6
Transcription antiterminator, PTS operonregulator
PRD domain protein {ECO:0000313|EMBL:EQH98620.1}; TaxID=1151372 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile F501.;"
L3_083_088G1_scaffold_197_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22644..23003
DNA (360bp) protein (120aa)
Glucitol operon activator family protein n=142 Tax=Clostridium difficile RepID=C9XLJ7_CLODC
hypothetical protein
Putative sorbitol-like operon activator protein (Glucitol) {ECO:0000313|EMBL:CCL30648.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_088G1_scaffold_197_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23038..23394
DNA (357bp) protein (119aa)
PTS system, Sorbitol-like IIA component (Glucitol) {ECO:0000313|EMBL:CCL22745.1}; EC=2.7.1.- {ECO:0000313|EMBL:CCL22745.1};; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
PTS system glucitol/sorbitol-specific IIA component family protein n=211 Tax=Clostridium difficile RepID=C9XLJ6_CLODC
srlB; PTS system transporter subunit IIA
L3_083_088G1_scaffold_197_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23431..24723
DNA (1293bp) protein (431aa)
Putative homoserine dehydrogenase n=2 Tax=Clostridium difficile RepID=T4PHY0_CLODI
hypothetical protein
Putative homoserine dehydrogenase {ECO:0000313|EMBL:EQG75372.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_088G1_scaffold_197_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25159..25797
DNA (639bp) protein (213aa)
Uncharacterized protein n=209 Tax=Clostridium difficile RepID=C9XLJ4_CLODC
hypothetical protein
Putative negative regulator of gluconeogenesis {ECO:0000313|EMBL:CCK98834.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_083_088G1_scaffold_197_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25810..26646
DNA (837bp) protein (279aa)
Putative pyruvate, phosphate dikinase regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921}; Short=PPDK regulatory protein {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.11.32 {ECO:0000256|HAMAP-Rule:MF_00921};; EC=2.7.4.27 {ECO:0000256|HAMAP-Rule:MF_00921};; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Putative pyruvate, phosphate dikinase regulatory protein n=161 Tax=Clostridium difficile RepID=T3GFH4_CLODC
PEP synthetase regulatory protein
L3_083_088G1_scaffold_197_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26707..29334
DNA (2628bp) protein (876aa)
Pyruvate, phosphate dikinase {ECO:0000313|EMBL:EQG75714.1}; EC=2.7.9.1 {ECO:0000313|EMBL:EQG75714.1};; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
Pyruvate, phosphate dikinase n=2 Tax=Clostridium difficile RepID=T4PIW1_CLODI
ppdK; pyruvate phosphate dikinase
L3_083_088G1_scaffold_197_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29548..29793
DNA (246bp) protein (82aa)
Double zinc ribbon family protein n=163 Tax=Clostridium difficile RepID=T3GJF3_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCL22740.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_083_088G1_scaffold_197_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30082..31380)
DNA (1299bp) protein (433aa)
Uncharacterized protein n=6 Tax=Clostridium difficile RepID=G6BZF1_CLODI
Outer membrane efflux family protein {ECO:0000313|EMBL:EQI81058.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
putative multidrug efflux pump
L3_083_088G1_scaffold_197_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31414..34548)
DNA (3135bp) protein (1045aa)
RND transporter, HAE1/HME family, permease protein n=102 Tax=Clostridium difficile RepID=G6BCR4_CLODI
Putative multidrug efflux pump {ECO:0000313|EMBL:CAJ69292.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
multidrug efflux pump
L3_083_088G1_scaffold_197_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34552..35775)
DNA (1224bp) protein (408aa)
Efflux transporter, RND family, MFP subunit n=32 Tax=Clostridium difficile RepID=T2VMC0_CLODI
putative lipoprotein
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:CDS87944.1}; Putative lipoprotein {ECO:0000313|EMBL:CDT34986.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_088G1_scaffold_197_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36027..36512
DNA (486bp) protein (162aa)
MarR family protein n=205 Tax=Clostridium difficile RepID=C9XLI6_CLODC
MarR family transcriptional regulator
MarR family protein {ECO:0000313|EMBL:EQE60994.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
Displaying items 1-30 of 46 in total

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