ggKbase home page

L3_083_088G1_scaffold_225

Search features with annotation key words

Displaying items 1-30 of 359 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_225_1
unknown

Not on your lists

2..289
DNA (288bp) protein (96aa)

This feature has no annotations

L3_083_088G1_scaffold_225_2
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

286..1443
DNA (1158bp) protein (386aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=7 Tax=Bacteroidales RepID=C7XBC3_9PORP
two-component sensor histidine kinase
L3_083_088G1_scaffold_225_3
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

1532..2122
DNA (591bp) protein (197aa)
Uncharacterized protein n=7 Tax=Bacteroidales RepID=K5Z9T3_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDB50087.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
hypothetical protein
L3_083_088G1_scaffold_225_4
Parabacteroides johnsonii, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists


2135..2320
DNA (186bp) protein (62aa)
50S ribosomal protein L32 n=14 Tax=Bacteroidales RepID=A7AJQ3_9PORP
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=999419 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides johnsonii CL02T12C29.;"
50S ribosomal protein L32
L3_083_088G1_scaffold_225_5
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

2423..3427
DNA (1005bp) protein (335aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=4 Tax=Bacteroidales RepID=FABH_PARD8
3-oxoacyl-ACP synthase
L3_083_088G1_scaffold_225_6
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

3408..4301
DNA (894bp) protein (298aa)
GTPase Era n=9 Tax=Bacteroidales RepID=A6LEP6_PARD8
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
era; GTP-binding protein Era
L3_083_088G1_scaffold_225_7
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4326..5639
DNA (1314bp) protein (438aa)
GTPase Der n=4 Tax=Bacteroidales RepID=C7XBC8_9PORP
GTPase Der {ECO:0000256|HAMAP-Rule:MF_00195, ECO:0000256|RuleBase:RU004481}; GTP-binding protein EngA {ECO:0000256|HAMAP-Rule:MF_00195}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
engA; GTP-binding protein EngA
L3_083_088G1_scaffold_225_8
Parabacteroides sp. D25, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5692..5967)
DNA (276bp) protein (92aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=A6LEP4_PARD8
hypothetical protein
RelE/StbE family addiction module toxin {ECO:0000313|EMBL:EKN30640.1}; TaxID=658661 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D25.;"
L3_083_088G1_scaffold_225_9
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5964..6173)
DNA (210bp) protein (70aa)
Uncharacterized protein n=3 Tax=Bacteroidales RepID=D0TI11_9BACE
Uncharacterized protein {ECO:0000313|EMBL:KDS68080.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_083_088G1_scaffold_225_10
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(6287..7138)
DNA (852bp) protein (284aa)
Putative hemagglutinin-related protein n=1 Tax=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) RepID=A6LEP3_PARD8
hemagglutinin-like protein
Uncharacterized protein {ECO:0000313|EMBL:KDS68072.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_083_088G1_scaffold_225_11
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

7690..9069
DNA (1380bp) protein (460aa)
Uncharacterized protein n=2 Tax=Bacteroidales RepID=K6BR46_9PORP
Putative uncharacterized protein {ECO:0000313|EMBL:EFI08425.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L3_083_088G1_scaffold_225_12
Bacteroides sp. 2_1_33B, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9608..9859)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0TI06_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EEY82760.1}; TaxID=469589 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_33B.;"
hypothetical protein
L3_083_088G1_scaffold_225_13
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

10044..10637
DNA (594bp) protein (198aa)
Uncharacterized protein n=6 Tax=Bacteroidales RepID=C7XBD4_9PORP
Uncharacterized protein {ECO:0000313|EMBL:EKN23598.1}; TaxID=999417 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis CL09T03C24.;"
hypothetical protein
L3_083_088G1_scaffold_225_14
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10697..13048)
DNA (2352bp) protein (784aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis CL03T12C09 RepID=K5ZCW0_9PORP
Beta-glucosidase {ECO:0000313|EMBL:KEJ84060.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
beta-glucosidase
L3_083_088G1_scaffold_225_15
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13233..15008)
DNA (1776bp) protein (592aa)
Uncharacterized protein n=1 Tax=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) RepID=A6LEN8_PARD8
Uncharacterized protein {ECO:0000313|EMBL:KEJ84061.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
hypothetical protein
L3_083_088G1_scaffold_225_16
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(15108..16184)
DNA (1077bp) protein (359aa)
Putative heme biosynthesis protein n=1 Tax=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) RepID=A6LEN7_PARD8
Radical SAM enzyme, rSAM/lipoprotein system protein {ECO:0000313|EMBL:KEJ84062.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
heme biosynthesis protein
L3_083_088G1_scaffold_225_17
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16190..17032)
DNA (843bp) protein (281aa)
Uncharacterized protein n=3 Tax=Bacteroidales RepID=A6LEN6_PARD8
hypothetical protein
Carboxypeptidase regulatory-like domain protein {ECO:0000313|EMBL:KDS68086.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_083_088G1_scaffold_225_18
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

17189..19036
DNA (1848bp) protein (616aa)
ABC transporter, ATP-binding protein, MsbA family n=9 Tax=Bacteroidales RepID=A6LEN5_PARD8
ABC transporter ATP-binding protein
ABC transporter family protein {ECO:0000313|EMBL:KDS68074.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_083_088G1_scaffold_225_19
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19119..21548
DNA (2430bp) protein (810aa)
Uncharacterized protein n=3 Tax=Bacteroidales RepID=C7XBE1_9PORP
Alpha-L-fucosidase 2 {ECO:0000313|EMBL:EFI08434.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
glycoside hydrolase
L3_083_088G1_scaffold_225_20
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21632..22846)
DNA (1215bp) protein (405aa)
Uncharacterized protein n=2 Tax=Parabacteroides RepID=K6B9G5_9PORP
Uncharacterized protein {ECO:0000313|EMBL:CDB50062.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
hypothetical protein
L3_083_088G1_scaffold_225_21
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(22887..23561)
DNA (675bp) protein (225aa)
Phosphate-specific transport system accessory protein PhoU n=9 Tax=Bacteroidales RepID=A6LEN2_PARD8
transcriptional regulator
Phosphate-specific transport system accessory protein PhoU {ECO:0000256|PIRNR:PIRNR003107}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
L3_083_088G1_scaffold_225_22
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23593..24345)
DNA (753bp) protein (251aa)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
Phosphate ABC transporter, ATP-binding protein n=6 Tax=Bacteroidales RepID=C7XBE4_9PORP
phosphate ABC transporter ATP-binding protein
L3_083_088G1_scaffold_225_23
Porphyromonas sp. 31_2, Porphyromonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24361..25248)
DNA (888bp) protein (296aa)
Phosphate ABC transporter, permease protein PstA n=5 Tax=Bacteroidales RepID=D0THZ3_9BACE
ABC transporter permease
Phosphate ABC transporter, permease PstA {ECO:0000313|EMBL:KEJ84069.1}; TaxID=658663 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas.;" source="Porphyromonas sp. 31_2.;"
L3_083_088G1_scaffold_225_24
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(25257..26444)
DNA (1188bp) protein (396aa)
Phosphate ABC transporter, permease protein PstC n=5 Tax=Bacteroidales RepID=D7IR62_9BACE
ABC transporter permease
Putative ABC transporter permease protein {ECO:0000313|EMBL:CDB50058.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
L3_083_088G1_scaffold_225_25
Parabacteroides sp. CAG:2, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(26624..27241)
DNA (618bp) protein (206aa)
Acetyl-CoA hydrolase/transferase family protein n=4 Tax=Bacteroidales RepID=A6LEM8_PARD8
acetyl-CoA hydrolase/transferase
Acetyl-CoA hydrolase/transferase family protein {ECO:0000313|EMBL:CDB50057.1}; TaxID=1262912 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides; environmental samples.;" source="Parabacteroides sp. CAG:2.;"
L3_083_088G1_scaffold_225_26
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27222..28064)
DNA (843bp) protein (281aa)
Succinate CoA transferase {ECO:0000313|EMBL:EEU50147.1}; EC=2.8.3.- {ECO:0000313|EMBL:EEU50147.1};; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
Succinate CoA transferase n=1 Tax=Bacteroides sp. 2_1_33B RepID=D0THZ0_9BACE
acetyl-CoA hydrolase/transferase
L3_083_088G1_scaffold_225_27
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(28166..28621)
DNA (456bp) protein (152aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A6LEM7_PARD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDS68069.1}; TaxID=1339344 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis str. 3999B T(B) 4.;"
L3_083_088G1_scaffold_225_28
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

28882..30255
DNA (1374bp) protein (458aa)
tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase {ECO:0000256|HAMAP-Rule:MF_01864}; EC=2.8.4.3 {ECO:0000256|HAMAP-Rule:MF_01864};; (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB {ECO:0000256|HAMAP-Rule:MF_01864}; tRNA-i(6)A37 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01864}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
(Dimethylallyl)adenosine tRNA methylthiotransferase MiaB n=6 Tax=Bacteroidales RepID=MIAB_PARD8
(dimethylallyl)adenosine tRNA methylthiotransferase
L3_083_088G1_scaffold_225_29
Bacteroides sp. 3_1_19, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(30316..31944)
DNA (1629bp) protein (543aa)
Glycoside hydrolase family 78 n=3 Tax=Bacteroidales RepID=A6LEM5_PARD8
glycoside hydrolase
Alpha-L-rhamnosidase (Putative) {ECO:0000313|EMBL:EFI08443.1}; TaxID=469592 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 3_1_19.;"
L3_083_088G1_scaffold_225_30
Parabacteroides distasonis, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(31984..33570)
DNA (1587bp) protein (529aa)
RagB/SusD domain-containing protein n=2 Tax=Bacteroidales RepID=D7IR67_9BACE
hypothetical protein
Putative outer membrane protein, probably involved in nutrient binding {ECO:0000313|EMBL:ABR44138.1}; TaxID=435591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC; 11152).;"
Displaying items 1-30 of 359 in total

View Taxonomy