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L3_083_088G1_scaffold_238

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_238_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..1119)
DNA (1119bp) protein (373aa)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Glucose-6-phosphate isomerase n=3 Tax=Bifidobacterium bifidum RepID=E3EPN1_BIFBS
gpi; glucose-6-phosphate isomerase
L3_083_088G1_scaffold_238_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1622..2623
DNA (1002bp) protein (334aa)
Uncharacterized protein n=4 Tax=Bifidobacterium bifidum RepID=I3WGB5_BIFBI
hypothetical protein
Membrane spanning protein with auxin efflux carrier domain {ECO:0000313|EMBL:KFI42439.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_083_088G1_scaffold_238_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2745..3413)
DNA (669bp) protein (223aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
xanthosine triphosphate pyrophosphatase (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IR25_BIFBI
L3_083_088G1_scaffold_238_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3493..4224)
DNA (732bp) protein (244aa)
rph; ribonuclease PH (EC:2.7.7.56)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Ribonuclease PH n=8 Tax=Bifidobacterium RepID=E4NZH1_BIFBP
L3_083_088G1_scaffold_238_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4427..5749
DNA (1323bp) protein (441aa)
pncB; nicotinate phosphoribosyltransferase (EC:2.4.2.11)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Nicotinate phosphoribosyltransferase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZH0_BIFBP
L3_083_088G1_scaffold_238_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5772..6014
DNA (243bp) protein (81aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=I3WGB1_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52563.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_238_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6116..6433
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2M088_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF15421.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_083_088G1_scaffold_238_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6805..7359)
DNA (555bp) protein (185aa)
Acetolactate synthase, small subunit {ECO:0000313|EMBL:AFL03923.1}; EC=2.2.1.6 {ECO:0000313|EMBL:AFL03923.1};; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Acetolactate synthase small subunit n=9 Tax=Bifidobacterium RepID=E3EPM5_BIFBS
ilvN; acetolactate synthase small subunit
L3_083_088G1_scaffold_238_9
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7395..9287)
DNA (1893bp) protein (631aa)
Acetolactate synthase large subunit n=2 Tax=Bifidobacterium RepID=R6H8G9_9BIFI
Acetolactate synthase large subunit {ECO:0000313|EMBL:CDB22507.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
ilvB; acetolactate synthase large subunit
L3_083_088G1_scaffold_238_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(9473..10240)
DNA (768bp) protein (256aa)
Ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231299}; EC=3.1.26.3 {ECO:0000256|HAMAP-Rule:MF_00104, ECO:0000256|SAAS:SAAS00231445};; Ribonuclease 3; Ribonuclease III {ECO:0000256|HAMAP-Rule:MF_00104}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Ribonuclease 3 n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WGA8_BIFBI
rncS; ribonuclease III
L3_083_088G1_scaffold_238_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10388..10582)
DNA (195bp) protein (65aa)
50S ribosomal protein L32 n=8 Tax=Bifidobacterium RepID=E3EPM2_BIFBS
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_083_088G1_scaffold_238_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10711..11325)
DNA (615bp) protein (205aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=R6GDV3_9BIFI
hypothetical protein
Putative ACR, COG1399 {ECO:0000313|EMBL:EFR49705.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_083_088G1_scaffold_238_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11390..12295)
DNA (906bp) protein (302aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=K2IR37_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82244.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_083_088G1_scaffold_238_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12379..12873)
DNA (495bp) protein (165aa)
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
Phosphopantetheine adenylyltransferase n=3 Tax=Bifidobacterium RepID=E4NZG2_BIFBP
L3_083_088G1_scaffold_238_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13043..13384
DNA (342bp) protein (114aa)
Uncharacterized protein n=8 Tax=Bifidobacterium RepID=I3WGA3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52555.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_238_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13407..15527)
DNA (2121bp) protein (707aa)
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:KFI42426.1}; EC=3.6.3.33 {ECO:0000313|EMBL:KFI42426.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
ATPase component of ABC transporter n=2 Tax=Bifidobacterium bifidum RepID=I3WGA2_BIFBI
uup; ABC transporter ATP-binding protein
L3_083_088G1_scaffold_238_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15634..16359)
DNA (726bp) protein (242aa)
Amidotransferase n=7 Tax=Bifidobacterium RepID=E3ENR1_BIFBS
amidotransferase
Class I glutamine amidotransferase {ECO:0000313|EMBL:ERI82240.1}; Putative amidotransferase {ECO:0000313|EMBL:BAQ97538.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_088G1_scaffold_238_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16506..18128
DNA (1623bp) protein (541aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
Cysteine--tRNA ligase n=3 Tax=Bifidobacterium RepID=E3ENR0_BIFBS
cysS; cysteinyl-tRNA synthetase
L3_083_088G1_scaffold_238_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18349..19257)
DNA (909bp) protein (303aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=K2IR41_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EKE51280.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_083_088G1_scaffold_238_20
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


19618..21264
DNA (1647bp) protein (549aa)
Signal recognition particle protein n=5 Tax=Bifidobacterium RepID=E4NZF6_BIFBP
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_083_088G1_scaffold_238_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21440..22612
DNA (1173bp) protein (391aa)
Endonuclease/exonuclease/phosphatase n=3 Tax=Bifidobacterium bifidum RepID=I3WG97_BIFBI
endonuclease/exonuclease/phosphatase
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:AFL03910.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_083_088G1_scaffold_238_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22864..23556)
DNA (693bp) protein (231aa)
Lysine exporter protein n=3 Tax=Bifidobacterium RepID=E3ENQ6_BIFBS
lysine exporter
Arginine exporter {ECO:0000313|EMBL:EKE51283.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
L3_083_088G1_scaffold_238_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23759..25288
DNA (1530bp) protein (510aa)
multiple substrate aminotransferase (EC:2.6.1.39)
Transcriptional regulator, GntR family n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2BVM6_BIFBI
Putative transcriptional regulator {ECO:0000313|EMBL:BAQ97532.1}; Transcriptional regulator, GntR family {ECO:0000313|EMBL:ERI82234.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_088G1_scaffold_238_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25441..25638)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2IR45_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51285.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_083_088G1_scaffold_238_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


25865..26308
DNA (444bp) protein (148aa)
30S ribosomal protein S16 n=5 Tax=Bifidobacterium RepID=E3ENQ4_BIFBS
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_083_088G1_scaffold_238_26
Bifidobacterium catenulatum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26311..26544
DNA (234bp) protein (78aa)
UPF0109 protein BBIF_0340 n=8 Tax=Bifidobacterium RepID=E3ENQ3_BIFBS
RNA-binding protein
UPF0109 protein BBCT_0186 {ECO:0000256|HAMAP-Rule:MF_00088}; TaxID=566552 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium catenulatum DSM 16992 = JCM 1194 = LMG 11043.;"
L3_083_088G1_scaffold_238_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26541..27155
DNA (615bp) protein (205aa)
Ribosome maturation factor RimM n=3 Tax=Bifidobacterium RepID=E3ENQ2_BIFBS
rimM; 16S rRNA processing protein rimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00055369}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_238_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27417..28415
DNA (999bp) protein (333aa)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014918}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|SAAS:SAAS00014917};; M1G-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; tRNA [GM37] methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
tRNA (guanine-N(1)-)-methyltransferase n=2 Tax=Bifidobacterium bifidum RepID=E4V7U5_BIFBI
tRNA (guanine-N1)-methyltransferase
L3_083_088G1_scaffold_238_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28662..29114
DNA (453bp) protein (151aa)
Hsp20-family heat shock chaperone n=3 Tax=Bifidobacterium bifidum RepID=E3ENQ0_BIFBS
Hsp20-family heat shock chaperone
Hsp20-family heat shock chaperone {ECO:0000313|EMBL:ADO52542.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_083_088G1_scaffold_238_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29264..29866)
DNA (603bp) protein (201aa)
Nitroreductase family protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2DL36_BIFBI
Oxidoreductase/nitroreductase {ECO:0000313|EMBL:KFI42413.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
nitroreductase domain
Displaying items 1-30 of 41 in total

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