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L3_083_088G1_scaffold_244

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_244_1
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..601
DNA (600bp) protein (200aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colihominis DSM 17241.;"
Lysine--tRNA ligase n=1 Tax=Clostridium symbiosum WAL-14163 RepID=E7GPV3_CLOSY
EMAP domain
L3_083_088G1_scaffold_244_2
Eubacterium eligens CAG:72, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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880..1509
DNA (630bp) protein (210aa)
Uncharacterized protein n=1 Tax=Eubacterium eligens CAG:72 RepID=R5ZZB8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA41784.1}; TaxID=1263077 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium eligens CAG:72.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_083_088G1_scaffold_244_3
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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1491..1886
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RFS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC47733.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_083_088G1_scaffold_244_4

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comp(1970..2299)
DNA (330bp) protein (110aa)
Transcriptional regulator n=1 Tax=uncultured bacterium scaffold00090 RepID=I6ZMA1_9BACT
Transcriptional regulator {ECO:0000313|EMBL:AFN84546.1}; TaxID=1132476 species="Bacteria; environmental samples.;" source="uncultured bacterium scaffold00090.;"
HxlR family transcriptional regulator
L3_083_088G1_scaffold_244_5
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2510..2695
DNA (186bp) protein (62aa)
Putative uncharacterized protein n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RZ70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHL63954.1}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum sp. 4_3_54A2FAA.;"
L3_083_088G1_scaffold_244_6
Stomatobaculum longum, Stomatobaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2801..3850
DNA (1050bp) protein (350aa)
Radical SAM additional 4Fe4S-binding domain-containing protein n=1 Tax=Stomatobaculum longum RepID=H1HUQ4_9FIRM
Radical SAM additional 4Fe4S-binding domain-containing protein {ECO:0000313|EMBL:EHO16625.1}; TaxID=796942 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Stomatobaculum.;" source="Stomatobaculum longum.;"
radical SAM domain-containing protein
L3_083_088G1_scaffold_244_7

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3847..4809
DNA (963bp) protein (321aa)
NADPH:quinone reductase n=1 Tax=uncultured bacterium scaffold00090 RepID=I7AI22_9BACT
NADPH:quinone reductase {ECO:0000313|EMBL:AFN84543.1}; TaxID=1132476 species="Bacteria; environmental samples.;" source="uncultured bacterium scaffold00090.;"
NADPH:quinone reductase and related Zn-dependent oxidoreductases
L3_083_088G1_scaffold_244_8
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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4823..5602
DNA (780bp) protein (260aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=S2Z733_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG87166.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1
L3_083_088G1_scaffold_244_9

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5547..6413
DNA (867bp) protein (289aa)
NAD-dependent protein deacetylase n=1 Tax=uncultured bacterium scaffold00090 RepID=I7AVD8_9BACT
NAD-dependent protein deacetylase {ECO:0000313|EMBL:AFN84540.1}; TaxID=1132476 species="Bacteria; environmental samples.;" source="uncultured bacterium scaffold00090.;"
hypothetical protein
L3_083_088G1_scaffold_244_10
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6457..7485)
DNA (1029bp) protein (343aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BSN9_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17471.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Transcriptional regulators
L3_083_088G1_scaffold_244_11
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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7692..9110
DNA (1419bp) protein (473aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B420_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN45830.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_083_088G1_scaffold_244_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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9125..9958
DNA (834bp) protein (278aa)
transketolase subunit A (EC:2.2.1.1)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BQN4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN45829.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_083_088G1_scaffold_244_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9958..10902
DNA (945bp) protein (315aa)
transketolase subunit B (EC:2.2.1.1)
Transketolase, C-terminal domain protein n=3 Tax=Lachnospiraceae RepID=A7B418_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD17474.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
L3_083_088G1_scaffold_244_14
Blautia sp. CAG:237, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10899..12386
DNA (1488bp) protein (496aa)
Glycerol kinase {ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|SAAS:SAAS00029376};; TaxID=1262755 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:237.;"
glpK3; glycerol kinase 1 (EC:2.7.1.30)
Carbohydrate kinase n=1 Tax=Blautia sp. CAG:237 RepID=R6L795_9FIRM
L3_083_088G1_scaffold_244_15
Clostridium nexile CAG:348, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12439..13608)
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6Q0M9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC24301.1}; TaxID=1263069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium nexile CAG:348.;"
Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family
L3_083_088G1_scaffold_244_16
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

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13843..14157
DNA (315bp) protein (105aa)
Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AUX0_SYNWW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABI69484.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen).;"
L3_083_088G1_scaffold_244_17
Roseburia sp. CAG:100, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14203..15081
DNA (879bp) protein (293aa)
Transcriptional regulator LysR family n=1 Tax=Roseburia sp. CAG:100 RepID=R7R6W3_9FIRM
Transcriptional regulator LysR family {ECO:0000313|EMBL:CDF46647.1}; TaxID=1262940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:100.;"
transcriptional regulator GltC
L3_083_088G1_scaffold_244_18
Roseburia sp. CAG:197, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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15193..15663
DNA (471bp) protein (157aa)
Flavodoxin n=1 Tax=Roseburia sp. CAG:197 RepID=R5YCY4_9FIRM
Flavodoxin {ECO:0000313|EMBL:CDA24780.1}; TaxID=1262943 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:197.;"
Flavodoxins
L3_083_088G1_scaffold_244_19
Coprococcus sp. CAG:782, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15676..16443
DNA (768bp) protein (256aa)
4-carboxymuconolactone decarboxylase n=1 Tax=Coprococcus sp. CAG:782 RepID=R5JZ12_9FIRM
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:CCY54231.1}; TaxID=1262863 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus sp. CAG:782.;"
Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit
L3_083_088G1_scaffold_244_20
[Clostridium] citroniae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16596..16805
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HEE7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHF00195.1}; TaxID=742733 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] citroniae WAL-17108.;"
hypothetical protein
L3_083_088G1_scaffold_244_21
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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16808..17179
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DJ90_CLOSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK77764.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_083_088G1_scaffold_244_22
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17324..18001)
DNA (678bp) protein (226aa)
Cyclic nucleotide-binding domain protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3Q7_9CLOT
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EEG54047.1}; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
cyclic nucleotide-binding domain-containing protein
L3_083_088G1_scaffold_244_23
Parabacteroides merdae, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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18074..18427
DNA (354bp) protein (118aa)
Uncharacterized protein n=4 Tax=Parabacteroides RepID=A7AFD6_9PORP
TIGR04076 family protein {ECO:0000313|EMBL:EKN15806.1}; TaxID=999420 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides merdae CL03T12C32.;"
hypothetical protein
L3_083_088G1_scaffold_244_24
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18643..19536
DNA (894bp) protein (298aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WPE2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ67484.1}; TaxID=999406 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A6.;"
HipA-like protein
L3_083_088G1_scaffold_244_25
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19526..20227
DNA (702bp) protein (234aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9WZF4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ18686.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
hypothetical protein
L3_083_088G1_scaffold_244_26
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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20423..21094
DNA (672bp) protein (224aa)
Response regulator receiver domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LLQ0_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EET58441.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
transcriptional regulator
L3_083_088G1_scaffold_244_27
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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21091..22149
DNA (1059bp) protein (353aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LLP9_9FIRM
Signal transduction histidine kinase
L3_083_088G1_scaffold_244_28
Marvinbryantia formatexigens, Marvinbryantia, Clostridiales, Clostridia, Firmicutes, Bacteria

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22156..22683
DNA (528bp) protein (176aa)
Uncharacterized protein n=1 Tax=Marvinbryantia formatexigens DSM 14469 RepID=C6LLP8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EET58439.1}; TaxID=478749 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Marvinbryantia.;" source="Marvinbryantia formatexigens DSM 14469.;"
hypothetical protein
L3_083_088G1_scaffold_244_29
unknown

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22649..22789
DNA (141bp) protein (47aa)

This feature has no annotations

L3_083_088G1_scaffold_244_30
Erysipelatoclostridium ramosum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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23031..25268
DNA (2238bp) protein (746aa)
Diguanylate cyclase (GGDEF) domain protein n=1 Tax=Clostridium ramosum DSM 1402 RepID=B0N790_9FIRM
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EDS17678.1}; TaxID=445974 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Erysipelatoclostridium ramosum DSM 1402.;"
diguanylate cyclase (GGDEF) domain
Displaying items 1-30 of 43 in total

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