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L3_083_088G1_scaffold_276

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_276_1
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..654)
DNA (654bp) protein (218aa)
GntR-family transcriptional regulator n=143 Tax=Clostridium difficile RepID=C9XPU7_CLODC
GntR-family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CCL31193.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_088G1_scaffold_276_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(902..2560)
DNA (1659bp) protein (553aa)
Trehalose-6-phosphate hydrolase {ECO:0000313|EMBL:CCK95427.1}; EC=3.2.1.93 {ECO:0000313|EMBL:CCK95427.1};; TaxID=1225722 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E1.;"
treA; trehalose-6-phosphate hydrolase TreA (EC:3.2.1.93)
Alpha,alpha-phosphotrehalase n=20 Tax=Clostridium difficile RepID=T2TFH1_CLODI
L3_083_088G1_scaffold_276_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2623..4056)
DNA (1434bp) protein (478aa)
Phosphotransferase system (PTS) trehalose-specific enzyme IIBC component {ECO:0000313|EMBL:CCK91718.1}; EC=2.7.1.69 {ECO:0000313|EMBL:CCK91718.1};; TaxID=1215060 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T20.;"
PTS system, glucose-like IIB component domain protein n=2 Tax=Clostridium difficile RepID=T4PGZ1_CLODI
trehalose permease IIC protein
L3_083_088G1_scaffold_276_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4304..6043
DNA (1740bp) protein (580aa)
Trehalase family protein n=11 Tax=Clostridium difficile RepID=T2TFF2_CLODI
Uncharacterized protein {ECO:0000313|EMBL:CCK99415.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
Glycogen debranching enzyme
L3_083_088G1_scaffold_276_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6059..6790)
DNA (732bp) protein (244aa)
DeoR-like helix-turn-helix domain protein n=21 Tax=Clostridium difficile RepID=T2TEN9_CLODI
Trehalose operon repressor {ECO:0000313|EMBL:CCK99416.1}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
GntR family transcriptional regulator
L3_083_088G1_scaffold_276_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7232..8950)
DNA (1719bp) protein (573aa)
ABC transporter, permease protein n=41 Tax=Clostridium difficile RepID=C9XPV0_CLODC
ABC transporter, permease protein {ECO:0000313|EMBL:CBE06361.1}; TaxID=645463 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain R20291) (Clostridium difficile).;"
ABC transporter permease
L3_083_088G1_scaffold_276_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8955..9944)
DNA (990bp) protein (330aa)
ABC transporter family protein n=4 Tax=Clostridium difficile RepID=T2UMP4_CLODI
ABC transporter family protein {ECO:0000313|EMBL:EQE60300.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
ABC transporter ATP-binding protein
L3_083_088G1_scaffold_276_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10040..11089)
DNA (1050bp) protein (350aa)
2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding family protein n=147 Tax=Clostridium difficile RepID=T2VWI3_CLODI
2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding family protein {ECO:0000313|EMBL:EQG74575.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
ABC-type transport system, iron-familyextracellular solute-binding protein
L3_083_088G1_scaffold_276_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11367..12035)
DNA (669bp) protein (223aa)
V-type ATP synthase subunit D n=162 Tax=Clostridium difficile RepID=VATD_CLOD6
ntpD; V-type ATP synthase subunit D
V-type ATP synthase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; V-ATPase subunit D {ECO:0000256|HAMAP-Rule:MF_00271}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_088G1_scaffold_276_10
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12041..13414)
DNA (1374bp) protein (458aa)
V-type ATP synthase subunit B (EC:3.6.3.14)
V-type ATP synthase beta chain n=220 Tax=Clostridium difficile RepID=VATB_CLOD6
V-type ATP synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00310}; V-ATPase subunit B {ECO:0000256|HAMAP-Rule:MF_00310}; TaxID=997828 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 050-P50-2011.;"
L3_083_088G1_scaffold_276_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13411..15189)
DNA (1779bp) protein (593aa)
V-type ATP synthase alpha chain {ECO:0000256|HAMAP-Rule:MF_00309}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_00309};; V-ATPase subunit A {ECO:0000256|HAMAP-Rule:MF_00309}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
V-type ATP synthase alpha chain n=206 Tax=Clostridium difficile RepID=VATA_CLOD6
ntpA; V-type ATP synthase subunit A
L3_083_088G1_scaffold_276_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15306..15623)
DNA (318bp) protein (106aa)
V-type ATP synthase subunit F (EC:3.6.3.14)
V-type ATP synthase subunit F {ECO:0000313|EMBL:CCL31202.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCL31202.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
V-type sodium ATP synthase subunit G n=209 Tax=Clostridium difficile RepID=C9XPV6_CLODC
L3_083_088G1_scaffold_276_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15616..16593)
DNA (978bp) protein (326aa)
V-type ATP synthase subunit C (EC:3.6.3.14)
V-type ATP synthase subunit C {ECO:0000313|EMBL:CCL31203.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCL31203.1};; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
ATP synthase (C/AC39) subunit n=189 Tax=Clostridium difficile RepID=C9XPV7_CLODC
L3_083_088G1_scaffold_276_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16608..17171)
DNA (564bp) protein (188aa)
V-type ATP synthase subunit E n=202 Tax=Clostridium difficile RepID=VATE_CLOD6
V-type sodium ATP synthase subunit E
V-type proton ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; V-ATPase subunit E {ECO:0000256|HAMAP-Rule:MF_00311}; TaxID=1215061 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E10.;"
L3_083_088G1_scaffold_276_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17223..17714)
DNA (492bp) protein (164aa)
V-type ATP synthase subunit K (EC:3.6.3.14)
V-type ATP synthase subunit K {ECO:0000313|EMBL:CCK88302.1}; EC=3.6.3.14 {ECO:0000313|EMBL:CCK88302.1};; TaxID=1215059 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T5.;"
V-type sodium ATP synthase subunit K n=219 Tax=Clostridium difficile RepID=C9XPV9_CLODC
L3_083_088G1_scaffold_276_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17717..19642)
DNA (1926bp) protein (642aa)
atpI; V-type sodium ATP synthase subunit I (EC:3.6.3.15)
V-type ATPase subunit I family protein n=66 Tax=Clostridium difficile RepID=T3GAW6_CLODC
V-type ATP synthase subunit I {ECO:0000256|RuleBase:RU361189}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_276_17
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19644..19955)
DNA (312bp) protein (104aa)
Uncharacterized protein n=205 Tax=Clostridium difficile RepID=T3G977_CLODC
uncharacterised protein
Uncharacterized protein {ECO:0000313|EMBL:EQG74555.1}; TaxID=1151334 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile DA00165.;"
L3_083_088G1_scaffold_276_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20585..20860)
DNA (276bp) protein (92aa)
Uncharacterized protein n=194 Tax=Clostridium difficile RepID=T3GCB7_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EQE60220.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
L3_083_088G1_scaffold_276_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20975..22384)
DNA (1410bp) protein (470aa)
L,D-transpeptidases n=30 Tax=Clostridium difficile RepID=U3W8S7_CLODI
Uncharacterized protein {ECO:0000313|EMBL:EHJ33326.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
conserved hypothetical protein
L3_083_088G1_scaffold_276_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22755..23417)
DNA (663bp) protein (221aa)
B3/4 domain protein n=2 Tax=Clostridium difficile RepID=T4PGT2_CLODI
hypothetical protein
Putative tRNA-binding protein {ECO:0000313|EMBL:CCL23312.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
L3_083_088G1_scaffold_276_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23671..25890)
DNA (2220bp) protein (740aa)
Diguanylate cyclase domain protein n=2 Tax=Clostridium difficile RepID=T4PGP7_CLODI
Putative signaling protein {ECO:0000313|EMBL:CCL23321.1}; TaxID=1215067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile T15.;"
signaling protein
L3_083_088G1_scaffold_276_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26166..28820)
DNA (2655bp) protein (885aa)
Aldehyde dehydrogenase family protein n=10 Tax=Clostridium difficile RepID=T2XUR6_CLODI
Aldehyde-alcohol dehydrogenase {ECO:0000256|PIRNR:PIRNR000111}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
adhE; bifunctional acetaldehyde-CoA/alcohol dehydrogenase
L3_083_088G1_scaffold_276_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29324..29524
DNA (201bp) protein (67aa)
Uncharacterized protein n=65 Tax=Clostridium difficile RepID=U3YXM8_CLODI
conserved hypothetical protein
Uncharacterised protein {ECO:0000313|EMBL:CKG87856.1}; Uncharacterized protein {ECO:0000313|EMBL:CDS88732.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_088G1_scaffold_276_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29731..30321)
DNA (591bp) protein (197aa)
Dipicolinate synthase, B chain n=207 Tax=Clostridium difficile RepID=C9XPW8_CLODC
spoVFB; dipicolinate synthase subunit B
Dipicolinate synthase subunit B {ECO:0000313|EMBL:CCL31226.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_088G1_scaffold_276_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30324..31199)
DNA (876bp) protein (292aa)
D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain protein n=141 Tax=Clostridium difficile RepID=T3GD52_CLODC
spoVFA; Dipicolinate synthase subunit A
Dipicolinate synthase subunit A {ECO:0000313|EMBL:CDS89342.1}; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
L3_083_088G1_scaffold_276_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31275..32666)
DNA (1392bp) protein (464aa)
AMP-binding enzyme family protein n=6 Tax=Clostridium difficile RepID=T2XTP9_CLODI
AMP-binding enzyme family protein {ECO:0000313|EMBL:EQE60139.1}; TaxID=1151268 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile CD45.;"
putative AMP-binding protein
L3_083_088G1_scaffold_276_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32670..33806)
DNA (1137bp) protein (379aa)
Acetyl-CoA C-acetyltransferase {ECO:0000313|EMBL:CDS89345.1}; Putative thiolase {ECO:0000313|EMBL:CDS88740.1}; EC=2.3.1.16 {ECO:0000313|EMBL:CDS88740.1};; TaxID=1496 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (Clostridium difficile).;"
thiolase (EC:2.3.1.16)
Acetyl-CoA C-acetyltransferase family protein n=2 Tax=Clostridium difficile RepID=T4PGQ1_CLODI
L3_083_088G1_scaffold_276_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33838..34383)
DNA (546bp) protein (182aa)
BioY family protein n=194 Tax=Clostridium difficile RepID=T3G8X1_CLODC
biotin synthase
Biotin synthase {ECO:0000313|EMBL:CCL31230.1}; TaxID=1215069 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile E15.;"
L3_083_088G1_scaffold_276_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34707..35486
DNA (780bp) protein (260aa)
Uncharacterized protein n=127 Tax=Clostridium difficile RepID=T3G7U9_CLODC
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ69866.1}; TaxID=272563 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile (strain 630) (Clostridium difficile).;"
L3_083_088G1_scaffold_276_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35941..36369)
DNA (429bp) protein (143aa)
Acetyltransferase family protein n=5 Tax=Clostridium difficile RepID=T2XUN9_CLODI
Acetyltransferase family protein {ECO:0000313|EMBL:EQI77939.1}; TaxID=1151391 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile Y384.;"
acetyltransferase
Displaying items 1-30 of 33 in total

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