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L3_083_088G1_scaffold_4

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Displaying items 1-30 of 253 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_088G1_scaffold_4_1
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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341..1501
DNA (1161bp) protein (387aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC:2.1.1.61)
tRNA-specific 2-thiouridylase MnmA n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VP71_9FIRM
L3_083_088G1_scaffold_4_2
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1491..2198
DNA (708bp) protein (236aa)
CAAX amino terminal protease family protein n=5 Tax=Firmicutes RepID=E4LU52_9CLOT
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EFR37684.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
putative metal-dependent membrane protease
L3_083_088G1_scaffold_4_3
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2218..4389
DNA (2172bp) protein (724aa)
ATP-dependent RecD-like DNA helicase {ECO:0000256|HAMAP-Rule:MF_01488}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01488};; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
RecD/TraA family helicase n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VP69_9FIRM
RecD/TraA family helicase
L3_083_088G1_scaffold_4_4
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4433..4609
DNA (177bp) protein (59aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=E4LU54_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY85923.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_083_088G1_scaffold_4_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4587..5729
DNA (1143bp) protein (381aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E4LU55_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ64098.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
permease
L3_083_088G1_scaffold_4_6
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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5722..8661
DNA (2940bp) protein (980aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
alanyl-tRNA synthetase (EC:6.1.1.7)
Alanine--tRNA ligase n=2 Tax=Erysipelotrichaceae RepID=H1B8C2_9FIRM
L3_083_088G1_scaffold_4_7
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8723..8980
DNA (258bp) protein (86aa)
Uncharacterized protein n=8 Tax=Firmicutes RepID=E2SIM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFP62609.1}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
hypothetical protein
L3_083_088G1_scaffold_4_8
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8980..9393
DNA (414bp) protein (138aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
Putative Holliday junction resolvase n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B8C4_9FIRM
Holliday junction resolvase
L3_083_088G1_scaffold_4_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9430..9690
DNA (261bp) protein (87aa)
UPF0473 protein HMPREF9406_1857 n=4 Tax=Firmicutes RepID=E4LNX5_9CLOT
UPF0473 protein QSI_3135 {ECO:0000256|HAMAP-Rule:MF_01448}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_083_088G1_scaffold_4_10
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

9665..10738
DNA (1074bp) protein (358aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae (miscellaneous) RepID=H1AZL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28990.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_083_088G1_scaffold_4_11
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10748..11380
DNA (633bp) protein (211aa)
Uridine kinase {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825}; EC=2.7.1.48 {ECO:0000256|HAMAP-Rule:MF_00551, ECO:0000256|RuleBase:RU003825};; Cytidine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; Uridine monophosphokinase {ECO:0000256|HAMAP-Rule:MF_00551}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
Uridine kinase n=4 Tax=Firmicutes RepID=E4LNX7_9CLOT
uridine kinase
L3_083_088G1_scaffold_4_12
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11406..11885
DNA (480bp) protein (160aa)
Transcription elongation factor GreA n=7 Tax=Firmicutes RepID=E4LNX8_9CLOT
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
greA; transcription elongation factor GreA
L3_083_088G1_scaffold_4_13
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11970..12434
DNA (465bp) protein (155aa)
ComEA protein n=4 Tax=Firmicutes RepID=E4LNX9_9CLOT
Competence protein ComEA {ECO:0000313|EMBL:KGJ51818.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
comE operon protein 1
L3_083_088G1_scaffold_4_14
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

12431..14395
DNA (1965bp) protein (655aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1B8D0_9FIRM
Competence protein ComEC {ECO:0000313|EMBL:KGJ51817.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Predicted hydrolase (metallo-beta-lactamase superfamily)
L3_083_088G1_scaffold_4_15
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14535..15494
DNA (960bp) protein (320aa)
DNA polymerase III, delta subunit n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B8D1_9FIRM
DNA polymerase III, delta subunit {ECO:0000313|EMBL:EHO28995.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
DNA polymerase III subunit delta
L3_083_088G1_scaffold_4_16
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15491..16693
DNA (1203bp) protein (401aa)
L-serine ammonia-lyase (EC:4.3.1.17)
L-serine ammonia-lyase n=3 Tax=Firmicutes RepID=H1AZT4_9FIRM
Putative L-serine ammonia-lyase {ECO:0000313|EMBL:EFR39429.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_083_088G1_scaffold_4_17
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16713..17213
DNA (501bp) protein (167aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E4LNY3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR39315.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
flavodoxin
L3_083_088G1_scaffold_4_18
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

17182..17481
DNA (300bp) protein (100aa)
Uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=H1B8D4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO28998.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
excinuclease ABC C subunit domain-containing protein
L3_083_088G1_scaffold_4_19
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(17787..18440)
DNA (654bp) protein (218aa)
Channel protein hemolysin III family n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6UIJ4_9FIRM
Channel protein hemolysin III family {ECO:0000313|EMBL:CDC84275.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
Predicted membrane protein, hemolysin III homolog
L3_083_088G1_scaffold_4_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18727..21657
DNA (2931bp) protein (977aa)
Chromosome partition protein Smc n=3 Tax=Firmicutes RepID=E4LNY6_9CLOT
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
chromosome segregation protein SMC
L3_083_088G1_scaffold_4_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21657..22628
DNA (972bp) protein (324aa)
Signal recognition particle receptor FtsY n=5 Tax=Firmicutes RepID=E4LNY7_9CLOT
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
signal recognition particle-docking protein FtsY
L3_083_088G1_scaffold_4_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22621..22935
DNA (315bp) protein (105aa)
UPF0122 protein HMPREF9406_1870 n=5 Tax=Firmicutes RepID=E4LNY8_9CLOT
UPF0122 protein QSI_3148 {ECO:0000256|HAMAP-Rule:MF_00245}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
putative DNA-binding protein
L3_083_088G1_scaffold_4_23
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

22951..24144
DNA (1194bp) protein (398aa)
Acetate kinase {ECO:0000256|HAMAP-Rule:MF_00020}; EC=2.7.2.1 {ECO:0000256|HAMAP-Rule:MF_00020};; Acetokinase {ECO:0000256|HAMAP-Rule:MF_00020}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
acetate kinase (EC:2.7.2.1)
Acetate kinase n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VP48_9FIRM
L3_083_088G1_scaffold_4_24
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24147..25097
DNA (951bp) protein (317aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VP47_9FIRM
Phosphoesterase {ECO:0000313|EMBL:KGJ51807.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Exopolyphosphatase-related proteins
L3_083_088G1_scaffold_4_25
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25219..27396
DNA (2178bp) protein (726aa)
SMI1 / KNR4 family protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LNZ1_9CLOT
SMI1 / KNR4 family protein {ECO:0000313|EMBL:EFR39345.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
GAD-like domain-containing protein
L3_083_088G1_scaffold_4_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27529..27720
DNA (192bp) protein (64aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1B8E3_9FIRM
SMI1/KNR4 family domain protein {ECO:0000313|EMBL:EQJ53679.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_083_088G1_scaffold_4_27
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

27738..29432
DNA (1695bp) protein (565aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VP45_9FIRM
Molecular chaperone HscC {ECO:0000313|EMBL:KGJ51805.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
molecular chaperone
L3_083_088G1_scaffold_4_28
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

29441..30841
DNA (1401bp) protein (467aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=E4LNZ3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGJ51804.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
molecular chaperone DnaJ
L3_083_088G1_scaffold_4_29
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

31086..34166
DNA (3081bp) protein (1027aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
DNA polymerase III, alpha subunit n=1 Tax=Erysipelotrichaceae bacterium 21_3 RepID=H1AZU7_9FIRM
dnaE; DNA polymerase III subunit alpha
L3_083_088G1_scaffold_4_30
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

34185..34673
DNA (489bp) protein (163aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VP42_9FIRM
GCN5 family acetyltransferase {ECO:0000313|EMBL:KGJ51802.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
acetyltransferase
Displaying items 1-30 of 253 in total

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