ggKbase home page

L3_083_119G1_scaffold_293

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_119G1_scaffold_293_1
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(331..897)
DNA (567bp) protein (189aa)
Uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=H1B1J0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC86619.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_083_119G1_scaffold_293_2
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1085..2263
DNA (1179bp) protein (393aa)
galactosamine 6-phosphate isomerase AgaS (EC:5.-.-.-)
Sugar isomerase, AgaS family n=7 Tax=Firmicutes RepID=E4LYJ1_9CLOT
Adhesin {ECO:0000313|EMBL:KGJ54758.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
L3_083_119G1_scaffold_293_3
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

2281..2709
DNA (429bp) protein (143aa)
PTS system fructose IIA component n=7 Tax=Firmicutes RepID=E4LYJ0_9CLOT
PTS system, mannose/fructose/sorbose family, IIA component {ECO:0000313|EMBL:ENY87844.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
PTS system mannose-specific component IIAB-like protein
L3_083_119G1_scaffold_293_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2724..3029
DNA (306bp) protein (102aa)
Preprotein translocase, YajC subunit n=5 Tax=Firmicutes RepID=E4LYI9_9CLOT
Preprotein translocase, YajC subunit {ECO:0000313|EMBL:EQJ55144.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
preprotein translocase, YajC subunit
L3_083_119G1_scaffold_293_5
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3167..3424)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VRT1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY87842.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_083_119G1_scaffold_293_6
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(3442..4614)
DNA (1173bp) protein (391aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=G1VRT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO31198.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
AraC family transcriptional regulator
L3_083_119G1_scaffold_293_7
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5036..5512
DNA (477bp) protein (159aa)
PTS system, mannose/fructose/sorbose family, IIB component {ECO:0000313|EMBL:EFR36468.1}; EC=2.7.1.69 {ECO:0000313|EMBL:EFR36468.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
PTS system, mannose/fructose/sorbose family, IIB component n=7 Tax=Firmicutes RepID=E4LYI6_9CLOT
agaB; PTS system N-acetylgalactosamine-specific IIB component
L3_083_119G1_scaffold_293_8
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5574..6395
DNA (822bp) protein (274aa)
PTS system sorbose-specific iic component n=7 Tax=Firmicutes RepID=E4LYI5_9CLOT
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EFR36203.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L3_083_119G1_scaffold_293_9
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

6385..7389
DNA (1005bp) protein (335aa)
PTS system mannose/fructose/sorbose family IID component n=5 Tax=Firmicutes RepID=E4LYI4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO31201.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
PTS system transporter subunit IID
L3_083_119G1_scaffold_293_10
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7511..8185
DNA (675bp) protein (225aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LYI3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR36433.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_083_119G1_scaffold_293_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8374..9048)
DNA (675bp) protein (225aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LYI2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ49431.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_083_119G1_scaffold_293_12
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9233..10282)
DNA (1050bp) protein (350aa)
PTS system mannose/fructose/sorbose family IID component n=3 Tax=Firmicutes RepID=E4LYI1_9CLOT
PTS system mannose/fructose/sorbose family IID component {ECO:0000313|EMBL:EFR36464.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
PTS system transporter subunit IID
L3_083_119G1_scaffold_293_13
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10272..11093)
DNA (822bp) protein (274aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=G1VRT9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC87506.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC
L3_083_119G1_scaffold_293_14
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11309..12394
DNA (1086bp) protein (362aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1B1H8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO31206.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
integrase family protein
L3_083_119G1_scaffold_293_15
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(12643..13128)
DNA (486bp) protein (162aa)
Thioesterase family protein n=7 Tax=Firmicutes RepID=E4LYH8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY87832.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
thioesterase superfamily protein
L3_083_119G1_scaffold_293_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13193..13762)
DNA (570bp) protein (190aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=7 Tax=Firmicutes RepID=E4LYH7_9CLOT
L3_083_119G1_scaffold_293_17
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

14027..15040
DNA (1014bp) protein (338aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361160}; EC=1.2.1.- {ECO:0000256|RuleBase:RU361160};; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
Glyceraldehyde-3-phosphate dehydrogenase, type I n=5 Tax=Firmicutes RepID=E4LYH6_9CLOT
L3_083_119G1_scaffold_293_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15287..16411
DNA (1125bp) protein (375aa)
Diguanylate cyclase (GGDEF) domain protein n=5 Tax=Firmicutes RepID=E4LYH5_9CLOT
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQJ49423.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_083_119G1_scaffold_293_19
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16480..16668
DNA (189bp) protein (63aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LYH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC87500.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_083_119G1_scaffold_293_20
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16949..17341
DNA (393bp) protein (131aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Cysteine--tRNA ligase n=2 Tax=Firmicutes RepID=H1B1H2_9FIRM
cysteinyl-tRNA synthetase
L3_083_119G1_scaffold_293_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17366..18286
DNA (921bp) protein (307aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Cysteine--tRNA ligase n=2 Tax=Firmicutes RepID=H1B1H2_9FIRM
cysteinyl-tRNA synthetase
L3_083_119G1_scaffold_293_22
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

18286..18672
DNA (387bp) protein (129aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Mini-ribonuclease 3 n=7 Tax=Firmicutes RepID=E4LYH2_9CLOT
ribonuclease III
L3_083_119G1_scaffold_293_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18669..19391
DNA (723bp) protein (241aa)
RNA methyltransferase, TrmH family, group 3 n=5 Tax=Firmicutes RepID=E4LYH1_9CLOT
RNA 2'-O ribose methyltransferase substrate binding family protein {ECO:0000313|EMBL:EQJ49419.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
TrmH family RNA methyltransferase
L3_083_119G1_scaffold_293_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19424..20008
DNA (585bp) protein (195aa)
RNA polymerase sigma factor, sigma-70 family n=5 Tax=Firmicutes RepID=E4LYH0_9CLOT
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EQJ49418.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
sigH; RNA polymerase factor sigma-70
L3_083_119G1_scaffold_293_25
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists


20101..20250
DNA (150bp) protein (50aa)
50S ribosomal protein L33 n=8 Tax=Firmicutes RepID=E2SNZ7_9FIRM
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
rpmG; 50S ribosomal protein L33
L3_083_119G1_scaffold_293_26
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20262..20441
DNA (180bp) protein (60aa)
Preprotein translocase, SecE subunit n=7 Tax=Firmicutes RepID=E4LYG8_9CLOT
Preprotein translocase, SecE subunit {ECO:0000313|EMBL:ENY87822.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_083_119G1_scaffold_293_27
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

20452..21003
DNA (552bp) protein (184aa)
Transcription termination/antitermination protein NusG n=5 Tax=Firmicutes RepID=E4LYG7_9CLOT
Transcription termination/antitermination protein NusG {ECO:0000256|HAMAP-Rule:MF_00948, ECO:0000256|SAAS:SAAS00078489}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
transcription antitermination protein NusG
L3_083_119G1_scaffold_293_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21263..21454
DNA (192bp) protein (64aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=E4LYG6_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EQJ49413.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_083_119G1_scaffold_293_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21515..22279
DNA (765bp) protein (255aa)
TIGR01457 family HAD hydrolase n=3 Tax=Firmicutes RepID=H1B6J9_9FIRM
HAD hydrolase, IIA family protein {ECO:0000313|EMBL:EQJ49412.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
TIGR01457 family HAD hydrolase
L3_083_119G1_scaffold_293_30
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22383..23681
DNA (1299bp) protein (433aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Enolase n=5 Tax=Firmicutes RepID=E4LYG4_9CLOT
enolase
Displaying items 1-30 of 48 in total

View Taxonomy