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L3_083_119G1_scaffold_296

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_119G1_scaffold_296_1
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..1398)
DNA (1398bp) protein (466aa)
DNA polymerase III PolC-type {ECO:0000256|HAMAP-Rule:MF_00356}; Short=PolIII {ECO:0000256|HAMAP-Rule:MF_00356};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00356};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
DNA polymerase III polC-type n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EIM4_9FIRM
DNA polymerase III subunit alpha
L3_083_119G1_scaffold_296_2
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1404..2477)
DNA (1074bp) protein (358aa)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184189}; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159, ECO:0000256|SAAS:SAAS00184173};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IW86_9CLOT
1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
L3_083_119G1_scaffold_296_3
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2500..3552)
DNA (1053bp) protein (351aa)
Zinc metalloprotease {ECO:0000256|RuleBase:RU362031}; EC=3.4.24.- {ECO:0000256|RuleBase:RU362031};; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
RIP metalloprotease RseP n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HBW7_9CLOT
RIP metalloprotease RseP
L3_083_119G1_scaffold_296_4
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3634..4788)
DNA (1155bp) protein (385aa)
1-deoxy-D-xylulose 5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007151}; Short=DXP reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183};; EC=1.1.1.267 {ECO:0000256|HAMAP-Rule:MF_00183, ECO:0000256|SAAS:SAAS00007105};; 1-deoxyxylulose-5-phosphate reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00183}; 2-C-methyl-D-erythritol 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00183}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
1-deoxy-D-xylulose 5-phosphate reductoisomerase (EC:1.1.1.267)
1-deoxy-D-xylulose 5-phosphate reductoisomerase n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6U6_9CLOT
L3_083_119G1_scaffold_296_5
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4838..5638)
DNA (801bp) protein (267aa)
Phosphatidate cytidylyltransferase {ECO:0000256|RuleBase:RU003938}; EC=2.7.7.41 {ECO:0000256|RuleBase:RU003938};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Phosphatidate cytidylyltransferase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EIM8_9FIRM
phosphatidate cytidylyltransferase
L3_083_119G1_scaffold_296_6
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5653..6372)
DNA (720bp) protein (240aa)
Isoprenyl transferase {ECO:0000256|HAMAP-Rule:MF_01139}; EC=2.5.1.- {ECO:0000256|HAMAP-Rule:MF_01139};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
undecaprenyl diphosphate synthase (EC:2.5.1.31)
Isoprenyl transferase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IR79_9CLOT
L3_083_119G1_scaffold_296_7
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6461..7012)
DNA (552bp) protein (184aa)
Ribosome-recycling factor n=7 Tax=Clostridium RepID=A8S186_9CLOT
Ribosome-recycling factor {ECO:0000256|HAMAP-Rule:MF_00040}; Short=RRF {ECO:0000256|HAMAP-Rule:MF_00040};; Ribosome-releasing factor {ECO:0000256|HAMAP-Rule:MF_00040}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
ribosome recycling factor
L3_083_119G1_scaffold_296_8
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7091..7792)
DNA (702bp) protein (234aa)
Uridylate kinase {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197273}; Short=UK {ECO:0000256|HAMAP-Rule:MF_01220};; EC=2.7.4.22 {ECO:0000256|HAMAP-Rule:MF_01220, ECO:0000256|SAAS:SAAS00197270};; Uridine monophosphate kinase {ECO:0000256|HAMAP-Rule:MF_01220}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
uridylate kinase (EC:2.7.4.22)
Uridylate kinase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EIN2_9FIRM
L3_083_119G1_scaffold_296_9
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8030..9349
DNA (1320bp) protein (440aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=2 Tax=Clostridium RepID=N9X702_9CLOT
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:ENZ10945.1}; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
diguanylate cyclase/phosphodiesterase
L3_083_119G1_scaffold_296_10

Not on your lists

9367..9801
DNA (435bp) protein (145aa)
Uncharacterized protein n=2 Tax=human gut metagenome RepID=K1TR50_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC70009.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_083_119G1_scaffold_296_11
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9826..10569)
DNA (744bp) protein (248aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6U2_9CLOT
putative hydrolase
L3_083_119G1_scaffold_296_12
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10901..12370
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5J6E9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY44601.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Putative cell wall binding repeat.
L3_083_119G1_scaffold_296_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12437..13060)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5ID29_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY39983.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
hypothetical protein
L3_083_119G1_scaffold_296_14
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13363..14226
DNA (864bp) protein (288aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194445}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137, ECO:0000256|SAAS:SAAS00194458};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazole-succinocarboxamide synthase n=1 Tax=Clostridium sp. CAG:7 RepID=R5IN86_9CLOT
L3_083_119G1_scaffold_296_15
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14326..16377)
DNA (2052bp) protein (684aa)
Myosin-crossreactive antigen n=1 Tax=butyrate-producing bacterium SS3/4 RepID=D7GP67_9FIRM
Myosin-crossreactive antigen
Myosin-crossreactive antigen {ECO:0000313|EMBL:CBL42602.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_083_119G1_scaffold_296_16
Dorea formicigenerans, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

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16676..17554
DNA (879bp) protein (293aa)
Putative uncharacterized protein n=1 Tax=Dorea formicigenerans 4_6_53AFAA RepID=G1WRN2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX74049.1}; TaxID=742765 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea.;" source="Dorea formicigenerans 4_6_53AFAA.;"
hypothetical protein
L3_083_119G1_scaffold_296_17
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17694..19508)
DNA (1815bp) protein (605aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6S3I6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC49891.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
Uncharacterized flavoproteins
L3_083_119G1_scaffold_296_18
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19669..19857)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MBZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS68318.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
hypothetical protein
L3_083_119G1_scaffold_296_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20304..22241)
DNA (1938bp) protein (646aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS32_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EFB74560.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative oxidoreductase
L3_083_119G1_scaffold_296_20
Firmicutes bacterium CAG:102, Firmicutes, Bacteria

Not on your lists

comp(22299..23183)
DNA (885bp) protein (295aa)
Shikimate dehydrogenase (NADP(+)) {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00228653}; Short=SDH {ECO:0000256|HAMAP-Rule:MF_00222};; EC=1.1.1.25 {ECO:0000256|HAMAP-Rule:MF_00222, ECO:0000256|SAAS:SAAS00216361};; TaxID=1262998 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:102.;"
shikimate dehydrogenase (EC:1.1.1.25)
Shikimate dehydrogenase n=1 Tax=Firmicutes bacterium CAG:102 RepID=R5AKE2_9FIRM
L3_083_119G1_scaffold_296_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23213..24052)
DNA (840bp) protein (280aa)
AP endonuclease, family 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS30_9FIRM
AP endonuclease, family 2 {ECO:0000313|EMBL:EFB74558.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Xylose isomerase-like TIM barrel.
L3_083_119G1_scaffold_296_22
Eubacterium sp. CAG:38, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24243..25142
DNA (900bp) protein (300aa)
LysR family transcriptional regulator transcription activator of glutamate synthase operon n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HDI8_9FIRM
LysR family transcriptional regulator transcription activator of glutamate synthase operon {ECO:0000313|EMBL:CDE37386.1}; TaxID=1262889 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:38.;"
Transcriptional regulator
L3_083_119G1_scaffold_296_23
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25223..25849)
DNA (627bp) protein (209aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region (EC:4.2.1.32)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5ID65_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60630.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
L3_083_119G1_scaffold_296_24
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25849..26748)
DNA (900bp) protein (300aa)
hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region (EC:4.2.1.32)
Tartrate dehydratase subunit alpha n=1 Tax=Clostridium sp. CAG:7 RepID=R5J1P5_9CLOT
Tartrate dehydratase subunit alpha {ECO:0000313|EMBL:CCY42857.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
L3_083_119G1_scaffold_296_25
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26811..28178)
DNA (1368bp) protein (456aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0PD66_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB87948.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
citrate transporter
L3_083_119G1_scaffold_296_26
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28550..29248)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0N838_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB87946.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
AraC family transcriptional regulator
L3_083_119G1_scaffold_296_27
Clostridium sp. BL8, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29318..29653)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Clostridium sp. BL8 RepID=T0N838_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQB87946.1}; TaxID=1354301 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BL8.;"
HTH-type transcriptional regulator
L3_083_119G1_scaffold_296_28
Clostridium sp. FS41, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29736..30053)
DNA (318bp) protein (106aa)
HxlR family transcriptional regulator, partial n=1 Tax=Clostridium arbusti RepID=UPI000287E9CC
HTH-type transcriptional activator HxlR {ECO:0000313|EMBL:KJJ70176.1}; TaxID=1609975 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. FS41.;"
helix-turn-helix HxlR type
L3_083_119G1_scaffold_296_29
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30183..31124
DNA (942bp) protein (314aa)
Fe-S oxidoreductase n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5XUB9_9FIRM
Fe-S oxidoreductase {ECO:0000313|EMBL:EHQ89355.1}; TaxID=768710 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus youngiae DSM 17734.;"
radical SAM protein
L3_083_119G1_scaffold_296_30
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31360..32298)
DNA (939bp) protein (313aa)
Elongation factor Ts n=1 Tax=Clostridium sp. CAG:7 RepID=R5IZR6_9CLOT
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
translation elongation factor Ts (EF-Ts)
Displaying items 1-30 of 38 in total

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