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L3_083_119G1_scaffold_309

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Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_119G1_scaffold_309_1
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

225..977
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2C999_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO32836.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_083_119G1_scaffold_309_2
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1074..1379
DNA (306bp) protein (102aa)
Anti-sigma factor antagonist n=3 Tax=Clostridiales RepID=G9YXM6_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
anti-sigma F factor antagonist
L3_083_119G1_scaffold_309_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1397..1840
DNA (444bp) protein (148aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=2 Tax=Clostridiales RepID=G9YXM5_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:KGF54546.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
L3_083_119G1_scaffold_309_4
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1837..2544
DNA (708bp) protein (236aa)
RNA polymerase sigma-70 factor, sigma-B/F/G subfamily n=4 Tax=Clostridiales RepID=H1CF94_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54547.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
putative RNA polymerase sigma factor
L3_083_119G1_scaffold_309_5
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3229..3522)
DNA (294bp) protein (98aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=U2AVA4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI64040.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_083_119G1_scaffold_309_6
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3645..3839
DNA (195bp) protein (65aa)
Restriction-modification system control element Bcll family protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AE07_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54549.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
helix-turn-helix domain-containing protein
L3_083_119G1_scaffold_309_7
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3910..4878
DNA (969bp) protein (323aa)
Putative bactoprenol glucosyl transferase-like protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AX99_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54550.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
glycosyl transferase 2
L3_083_119G1_scaffold_309_8
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4859..5269
DNA (411bp) protein (137aa)
GtrA-like protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C423_9CLOT
GtrA-like protein {ECO:0000313|EMBL:ERI64037.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
Predicted membrane protein
L3_083_119G1_scaffold_309_9
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5306..6334
DNA (1029bp) protein (343aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF89_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32828.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_083_119G1_scaffold_309_10
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6337..8142
DNA (1806bp) protein (602aa)
Copper amine oxidase domain protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AV99_9CLOT
Copper amine oxidase domain protein {ECO:0000313|EMBL:ERI64035.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
L3_083_119G1_scaffold_309_11
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8156..9373)
DNA (1218bp) protein (406aa)
Putative proton/sodium-glutamate symport protein GltT n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXL7_9FIRM
Putative proton/sodium-glutamate symport protein GltT {ECO:0000313|EMBL:EHM37256.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
sodium:dicarboxylate symporter
L3_083_119G1_scaffold_309_12
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9436..10317
DNA (882bp) protein (294aa)
Radical SAM domain protein n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXL6_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:EHM37255.1}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
radical SAM protein
L3_083_119G1_scaffold_309_13
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10314..10925)
DNA (612bp) protein (204aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YXL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERI64032.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_083_119G1_scaffold_309_14
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10919..11419)
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=G9YXL4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32823.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_083_119G1_scaffold_309_15
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11635..12051
DNA (417bp) protein (139aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=U2AV95_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHO32822.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein
L3_083_119G1_scaffold_309_16
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12481..13398)
DNA (918bp) protein (306aa)
NlpC/P60 family protein n=2 Tax=Clostridiales RepID=U2AX90_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54559.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
NLP/P60 protein
L3_083_119G1_scaffold_309_17
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13473..13763)
DNA (291bp) protein (97aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=G9YXL1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54560.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
hypothetical protein
L3_083_119G1_scaffold_309_18
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13903..15240)
DNA (1338bp) protein (446aa)
Putative type IV conjugative transfer system protein TraL n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2AV90_9CLOT
Putative type IV conjugative transfer system protein TraL {ECO:0000313|EMBL:ERI64025.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
hypothetical protein
L3_083_119G1_scaffold_309_19
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15303..19076)
DNA (3774bp) protein (1258aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rpoC; DNA-directed RNA polymerase beta' subunit (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF79_9FIRM
L3_083_119G1_scaffold_309_20
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19099..22806)
DNA (3708bp) protein (1236aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=411475 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Flavonifractor plautii ATCC 29863.;"
rpoB; DNA-directed RNA polymerase beta chain (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Flavonifractor plautii ATCC 29863 RepID=G9YXK8_9FIRM
L3_083_119G1_scaffold_309_21
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23146..24498
DNA (1353bp) protein (451aa)
Putative arginine utilization regulatory protein RocR n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2C407_9CLOT
Putative arginine utilization regulatory protein RocR {ECO:0000313|EMBL:ERI64022.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
ATPase AAA
L3_083_119G1_scaffold_309_22
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24666..26258
DNA (1593bp) protein (531aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32814.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
Predicted metal-dependent hydrolase with the TIM-barrel fold
L3_083_119G1_scaffold_309_23
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26309..27643
DNA (1335bp) protein (445aa)
Branched-chain amino acid transport system II carrier protein n=2 Tax=Clostridiales RepID=G9YXK5_9FIRM
Branched-chain amino acid transport system II carrier protein {ECO:0000313|EMBL:EHO32813.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
branched-chain amino acid ABC transporter substrate-binding protein
L3_083_119G1_scaffold_309_24
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27868..28110
DNA (243bp) protein (81aa)
50S ribosomal protein L7Ae family protein n=3 Tax=Clostridiales RepID=G9YXK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KGF54568.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
50S ribosomal protein L7
L3_083_119G1_scaffold_309_25
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28185..28607
DNA (423bp) protein (141aa)
30S ribosomal protein S12 n=3 Tax=Clostridiales RepID=G9YXK2_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
rpsL; 30S ribosomal protein S12
L3_083_119G1_scaffold_309_26
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


28817..29287
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF71_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
ribosomal protein S7
L3_083_119G1_scaffold_309_27
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29302..31407
DNA (2106bp) protein (702aa)
Elongation factor G n=3 Tax=Clostridiales RepID=G9YXK0_9FIRM
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
fusA; elongation factor G
L3_083_119G1_scaffold_309_28
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31534..32733
DNA (1200bp) protein (400aa)
Elongation factor Tu n=3 Tax=Clostridiales RepID=G9YXJ9_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
tuf; elongation factor Tu
L3_083_119G1_scaffold_309_29
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33042..33911
DNA (870bp) protein (290aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF68_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32807.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
putative mechanosensitive ion channelprotein,MscS family
L3_083_119G1_scaffold_309_30
Lachnospiraceae bacterium 7_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33908..34432
DNA (525bp) protein (175aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 7_1_58FAA RepID=H1CF67_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO32806.1}; TaxID=658087 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 7_1_58FAA.;"
hypothetical protein predicted by Glimmer/Critica
Displaying items 1-30 of 78 in total

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