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L3_083_119G1_scaffold_400

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_119G1_scaffold_400_1
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(2..139)
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Erysipelotrichaceae bacterium 2_2_44A RepID=G1VJV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGX69145.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
L3_083_119G1_scaffold_400_2
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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679..1287
DNA (609bp) protein (203aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LVL9_9CLOT
Riboflavin transporter {ECO:0000256|PIRNR:PIRNR037778}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Predicted membrane protein
L3_083_119G1_scaffold_400_3
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

1301..1756
DNA (456bp) protein (152aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=E4LVL8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY88159.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
Pyridoxamine 5'-phosphate oxidase.
L3_083_119G1_scaffold_400_4
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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1944..2834
DNA (891bp) protein (297aa)
33 kDa chaperonin n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6UMP1_9FIRM
33 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00117, ECO:0000256|SAAS:SAAS00038673}; Heat shock protein 33 homolog {ECO:0000256|HAMAP-Rule:MF_00117}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
Disulfide bond chaperones of the HSP33 family
L3_083_119G1_scaffold_400_5
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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2887..3840
DNA (954bp) protein (318aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
tRNA-dihydrouridine synthase n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6UHK9_9FIRM
tRNA-U20-dihydrouridine synthase
L3_083_119G1_scaffold_400_6
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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4192..5886
DNA (1695bp) protein (565aa)
M3 family oligoendopeptidase (EC:3.4.24.-)
Oligoendopeptidase, M3 family n=5 Tax=Firmicutes RepID=E4LVL5_9CLOT
M3 family oligoendopeptidase {ECO:0000313|EMBL:EHO31715.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
L3_083_119G1_scaffold_400_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6373..7857
DNA (1485bp) protein (495aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Lysyl-tRNA synthetase (class II) (EC:6.1.1.6)
Lysine--tRNA ligase n=5 Tax=Firmicutes RepID=E4LVL4_9CLOT
L3_083_119G1_scaffold_400_8
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7927..8817
DNA (891bp) protein (297aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LVL3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR37153.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_083_119G1_scaffold_400_9
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

8810..9490
DNA (681bp) protein (227aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LVL2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC82959.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
hypothetical protein
L3_083_119G1_scaffold_400_10
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10602..10895)
DNA (294bp) protein (98aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
CRISPR-associated endoribonuclease Cas2 n=5 Tax=Erysipelotrichaceae RepID=G1VUW2_9FIRM
CRISPR-associated endoribonuclease Cas2
L3_083_119G1_scaffold_400_11
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10902..11933)
DNA (1032bp) protein (344aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
CRISPR-associated endonuclease Cas1 n=5 Tax=Firmicutes RepID=E4LVL1_9CLOT
CRISPR-associated protein Cas1
L3_083_119G1_scaffold_400_12
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(11930..12598)
DNA (669bp) protein (223aa)
CRISPR-associated protein Cas4 n=4 Tax=Firmicutes RepID=E4LVL0_9CLOT
CRISPR-associated protein cas4 {ECO:0000313|EMBL:CDC82964.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
CRISPR-associated protein Cas4
L3_083_119G1_scaffold_400_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12585..13430)
DNA (846bp) protein (282aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LVK9_9CLOT
CRISPR-associated , CT1132 family protein {ECO:0000313|EMBL:EQJ55262.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
protein Csd2 family protein
L3_083_119G1_scaffold_400_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13427..15307)
DNA (1881bp) protein (627aa)
CRISPR-associated protein, Csd1 family n=5 Tax=Firmicutes RepID=E4LVK8_9CLOT
CRISPR-associated family protein {ECO:0000313|EMBL:EQJ55263.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
CRISPR-associated protein, Csd1 family
L3_083_119G1_scaffold_400_15
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(15291..16031)
DNA (741bp) protein (247aa)
CRISPR-associated protein cas5, subtype I-c/dvulg n=4 Tax=Firmicutes RepID=H1AXA8_9FIRM
CRISPR-associated protein cas5, subtype I-c/dvulg {ECO:0000313|EMBL:EHO31724.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
CRISPR-associated protein Cas5, subtype I-C/DVULG
L3_083_119G1_scaffold_400_16
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16546..18903)
DNA (2358bp) protein (786aa)
CRISPR-associated helicase cas3 n=2 Tax=Erysipelotrichaceae RepID=H1AXA7_9FIRM
CRISPR-associated helicase cas3 {ECO:0000313|EMBL:CDC82971.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
CRISPR-associated helicase Cas3
L3_083_119G1_scaffold_400_17
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19049..20929
DNA (1881bp) protein (627aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LVK5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR37051.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_083_119G1_scaffold_400_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20995..21984)
DNA (990bp) protein (330aa)
L-aminopeptidase/D-esterase (EC:3.4.11.19)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1AXA5_9FIRM
Peptidase S58 family protein {ECO:0000313|EMBL:EQJ55268.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_083_119G1_scaffold_400_19
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22150..23544
DNA (1395bp) protein (465aa)
MATE efflux family protein n=3 Tax=Firmicutes RepID=E4LVK3_9CLOT
MATE efflux family protein {ECO:0000313|EMBL:EFR37208.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
MATE efflux family protein
L3_083_119G1_scaffold_400_20
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

24316..25749
DNA (1434bp) protein (478aa)
dbpA; ATP-dependent RNA helicase dbpA (EC:3.6.4.13)
ATP-dependent RNA helicase DbpA n=1 Tax=Erysipelotrichaceae bacterium CAG:64 RepID=R6UES3_9FIRM
ATP-dependent RNA helicase DbpA {ECO:0000313|EMBL:CDC82975.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_083_119G1_scaffold_400_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25849..26361
DNA (513bp) protein (171aa)
Ferritin {ECO:0000256|RuleBase:RU361145}; EC=1.16.3.2 {ECO:0000256|RuleBase:RU361145};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Ferritin-like protein n=5 Tax=Firmicutes RepID=E4LVK1_9CLOT
Ferritin-like protein
L3_083_119G1_scaffold_400_22
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

26567..27199
DNA (633bp) protein (211aa)
Transcriptional regulator, MerR family n=3 Tax=Firmicutes RepID=E4LVK0_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:KGJ53937.1}; TaxID=1522 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="Clostridium innocuum.;"
Predicted transcriptional regulators
L3_083_119G1_scaffold_400_23
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27177..27845
DNA (669bp) protein (223aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LVJ9_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR36945.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
spermidine/putrescine import ATP-binding protein potA
L3_083_119G1_scaffold_400_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27842..28849
DNA (1008bp) protein (336aa)
Putative membrane protein n=1 Tax=Clostridium difficile P28 RepID=T4NIZ7_CLODI
Putative membrane protein {ECO:0000313|EMBL:EQJ55274.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_083_119G1_scaffold_400_25
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29419..30411
DNA (993bp) protein (331aa)
Sugar-binding domain protein n=2 Tax=Firmicutes RepID=E4LVJ7_9CLOT
Sugar-binding domain protein {ECO:0000313|EMBL:EFR37037.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
LacI family transcriptional regulator
L3_083_119G1_scaffold_400_26
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

30476..31177
DNA (702bp) protein (234aa)
ribulose-phosphate 3-epimerase (EC:5.1.3.1)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VUU6_9FIRM
Ribulose-phosphate 3-epimerase {ECO:0000313|EMBL:ENY88083.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_083_119G1_scaffold_400_27
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(31414..32091)
DNA (678bp) protein (226aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VUU5_9FIRM
TIGR02453 family protein {ECO:0000313|EMBL:ENY88082.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_083_119G1_scaffold_400_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32093..32947)
DNA (855bp) protein (285aa)
Sigma-70 region 2 n=5 Tax=Firmicutes RepID=E4LVJ4_9CLOT
RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EQJ55280.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
RNA polymerase, sigma subunit, ECF family
Displaying 28 items

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