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L3_083_119G1_scaffold_256

Search features with annotation key words

Displaying items 1-30 of 50 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_119G1_scaffold_256_1
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..549)
DNA (549bp) protein (183aa)
Collagen triple helix repeat protein n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9QZ55_CLOSW
Collagen triple helix repeat protein
Collagen triple helix repeat protein {ECO:0000313|EMBL:ADL04306.1}; TaxID=610130 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533; / WM1).;"
L3_083_119G1_scaffold_256_2
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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707..1894
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9J4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ48320.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family
L3_083_119G1_scaffold_256_3
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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1964..3460
DNA (1497bp) protein (499aa)
Glycerol kinase {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376}; EC=2.7.1.30 {ECO:0000256|HAMAP-Rule:MF_00186, ECO:0000256|SAAS:SAAS00029376};; ATP:glycerol 3-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00186}; Glycerokinase {ECO:0000256|HAMAP-Rule:MF_00186}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Glycerol kinase (EC:2.7.1.30)
Glycerol kinase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9J3_9FIRM
L3_083_119G1_scaffold_256_4
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

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3487..3930
DNA (444bp) protein (148aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6R5B4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC44128.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
hypothetical protein
L3_083_119G1_scaffold_256_5
Firmicutes bacterium ASF500, Firmicutes, Bacteria

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3971..4255
DNA (285bp) protein (95aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium ASF500 RepID=V2YAW9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ESL12281.1}; TaxID=1378168 species="Bacteria; Firmicutes.;" source="Firmicutes bacterium ASF500.;"
L3_083_119G1_scaffold_256_6
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4333..4881)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE11_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47057.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Membrane-associated phospholipid phosphatase
L3_083_119G1_scaffold_256_7
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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5054..6133
DNA (1080bp) protein (360aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE10_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47056.2}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
UDP-glycosyl transferase/glycogen phosphorylase
L3_083_119G1_scaffold_256_8
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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6430..6927
DNA (498bp) protein (166aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929, ECO:0000256|PIRNR:PIRNR001338};; 5-(carboxyamino)imidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
phosphoribosylaminoimidazole carboxylase (EC:4.1.1.21)
N5-carboxyaminoimidazole ribonucleotide mutase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE09_9FIRM
L3_083_119G1_scaffold_256_9
Firmicutes bacterium CAG:145, Firmicutes, Bacteria

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6998..7690
DNA (693bp) protein (231aa)
Phosphoribosylaminoimidazole-succinocarboxamide synthase {ECO:0000256|HAMAP-Rule:MF_00137}; EC=6.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00137};; SAICAR synthetase {ECO:0000256|HAMAP-Rule:MF_00137}; TaxID=1263005 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:145.;"
phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
Phosphoribosylaminoimidazolesuccinocarboxamide synthase n=1 Tax=Firmicutes bacterium CAG:145 RepID=R6EQ06_9FIRM
L3_083_119G1_scaffold_256_10
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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7835..9259
DNA (1425bp) protein (475aa)
Amidophosphoribosyltransferase {ECO:0000256|PIRNR:PIRNR000485}; Short=ATase {ECO:0000256|PIRNR:PIRNR000485};; EC=2.4.2.14 {ECO:0000256|PIRNR:PIRNR000485};; Glutamine phosphoribosylpyrophosphate amidotransferase {ECO:0000256|PIRNR:PIRNR000485}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Amidophosphoribosyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE07_9FIRM
hypothetical protein
L3_083_119G1_scaffold_256_11
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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9407..10450
DNA (1044bp) protein (348aa)
Phosphoribosylformylglycinamidine cyclo-ligase {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370}; EC=6.3.3.1 {ECO:0000256|HAMAP-Rule:MF_00741, ECO:0000256|RuleBase:RU004370};; AIR synthase {ECO:0000256|HAMAP-Rule:MF_00741}; AIRS {ECO:0000256|HAMAP-Rule:MF_00741}; Phosphoribosyl-aminoimidazole synthetase {ECO:0000256|HAMAP-Rule:MF_00741}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE06_9FIRM
L3_083_119G1_scaffold_256_12
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10567..11205
DNA (639bp) protein (213aa)
Phosphoribosylglycinamide formyltransferase {ECO:0000256|HAMAP-Rule:MF_01930}; EC=2.1.2.2 {ECO:0000256|HAMAP-Rule:MF_01930};; 5'-phosphoribosylglycinamide transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01930}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase (EC:2.1.2.2)
Phosphoribosylglycinamide formyltransferase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE05_9FIRM
L3_083_119G1_scaffold_256_13
unknown

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11377..11616
DNA (240bp) protein (80aa)

This feature has no annotations

L3_083_119G1_scaffold_256_14
unknown

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11600..11839
DNA (240bp) protein (80aa)

This feature has no annotations

L3_083_119G1_scaffold_256_15
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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11826..12533
DNA (708bp) protein (236aa)
IMP cyclohydrolase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE04_9FIRM
IMP cyclohydrolase {ECO:0000313|EMBL:EGJ47050.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
IMP cyclohydrolase-like protein.
L3_083_119G1_scaffold_256_16
unknown

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12565..12687
DNA (123bp) protein (41aa)

This feature has no annotations

L3_083_119G1_scaffold_256_17
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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12824..13663
DNA (840bp) protein (280aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47049.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_083_119G1_scaffold_256_18
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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13756..14928
DNA (1173bp) protein (391aa)
Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE02_9FIRM
Phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase {ECO:0000313|EMBL:EGJ47048.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
5-aminoimidazole-4-carboxamide ribonucleotide transformylase
L3_083_119G1_scaffold_256_19
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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15207..16463
DNA (1257bp) protein (419aa)
Phosphoribosylamine--glycine ligase {ECO:0000256|HAMAP-Rule:MF_00138}; EC=6.3.4.13 {ECO:0000256|HAMAP-Rule:MF_00138};; GARS {ECO:0000256|HAMAP-Rule:MF_00138}; Glycinamide ribonucleotide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; Phosphoribosylglycinamide synthetase {ECO:0000256|HAMAP-Rule:MF_00138}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Phosphoribosylamine--glycine ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE01_9FIRM
phosphoribosylamine--glycine ligase
L3_083_119G1_scaffold_256_20
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16460..17131
DNA (672bp) protein (224aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED (EC:5.4.2.6)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XE00_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ47046.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
L3_083_119G1_scaffold_256_21
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17189..17863)
DNA (675bp) protein (225aa)
TIGR02453 family protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=T5RIJ9_9FIRM
TIGR02453 family protein {ECO:0000313|EMBL:EQN60306.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
hypothetical protein
L3_083_119G1_scaffold_256_22
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17886..19727)
DNA (1842bp) protein (614aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46874.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
putative hydrolase
L3_083_119G1_scaffold_256_23
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

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20347..21516
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XDH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGJ46872.1}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
5-bromo-4-chloroindolyl phosphate hydrolysis protein.
L3_083_119G1_scaffold_256_24
[Eubacterium] siraeum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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21586..21930
DNA (345bp) protein (115aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=R7AB26_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK95650.1}; TaxID=657319 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Eubacterium] siraeum 70/3.;"
L3_083_119G1_scaffold_256_25
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22036..22545)
DNA (510bp) protein (170aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Dihydrofolate reductase (EC:1.5.1.3)
Dihydrofolate reductase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA26_9FIRM
L3_083_119G1_scaffold_256_26
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22584..23414)
DNA (831bp) protein (277aa)
Thymidylate synthase {ECO:0000256|SAAS:SAAS00215270}; EC=2.1.1.- {ECO:0000256|SAAS:SAAS00273274};; EC=2.1.1.45 {ECO:0000256|SAAS:SAAS00215290};; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
thyA; thymidylate synthase (EC:2.1.1.45)
Thymidylate synthase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XA25_9FIRM
L3_083_119G1_scaffold_256_27
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23509..23796)
DNA (288bp) protein (96aa)
Transposase, IS4 family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DAL5_CLOS4
Transposase, IS4 family {ECO:0000313|EMBL:ERI99849.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 / VPI C48-50).;"
putative transposase for insertion sequence element
L3_083_119G1_scaffold_256_28
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(24129..25565)
DNA (1437bp) protein (479aa)
Na+/H+ antiporter family protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4P6_9CLOT
Na+/H+ antiporter family protein {ECO:0000313|EMBL:EEG73039.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
Na+/H+ antiporter
L3_083_119G1_scaffold_256_29
[Clostridium] hylemonae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(25639..26820)
DNA (1182bp) protein (394aa)
Putative alanine dehydrogenase n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4P5_9CLOT
Putative alanine dehydrogenase {ECO:0000313|EMBL:EEG73038.1}; TaxID=553973 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] hylemonae DSM 15053.;"
ald; hypothetical protein
L3_083_119G1_scaffold_256_30
Ruminococcaceae bacterium D16, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27259..28251)
DNA (993bp) protein (331aa)
birA; transcriptional regulator/biotin--[acetyl-CoA-carboxylase] ligase (EC:6.3.4.15)
Biotin-[acetyl-CoA-carboxylase] ligase n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4XEV7_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=552398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; unclassified Ruminococcaceae.;" source="Ruminococcaceae bacterium D16.;"
Displaying items 1-30 of 50 in total

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