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L3_083_366G1_scaffold_1076

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_366G1_scaffold_1076_1
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

comp(282..932)
DNA (651bp) protein (217aa)
Channel protein hemolysin III family n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6ELM6_9FIRM
Channel protein hemolysin III family {ECO:0000313|EMBL:CDB00865.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
channel protein, hemolysin III family
L3_083_366G1_scaffold_1076_2
Firmicutes bacterium CAG:194, Firmicutes, Bacteria

Not on your lists

comp(1145..2872)
DNA (1728bp) protein (576aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:194 RepID=R5R3X0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ27742.1}; TaxID=1263008 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:194.;"
L3_083_366G1_scaffold_1076_3
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2874..3140)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W0R8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD04663.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_366G1_scaffold_1076_4
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3507..4181
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W5B4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD04665.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_366G1_scaffold_1076_5
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4735..5337
DNA (603bp) protein (201aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VWW7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD03253.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_366G1_scaffold_1076_6
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5410..5973
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6XA81_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD03252.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family
L3_083_366G1_scaffold_1076_7
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6085..6711
DNA (627bp) protein (209aa)
Transcriptional regulator n=1 Tax=Clostridium sp. CAG:91 RepID=R6WGG0_9CLOT
Transcriptional regulator {ECO:0000313|EMBL:CDD03251.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
XRE family transcriptional regulator
L3_083_366G1_scaffold_1076_8
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6708..7898)
DNA (1191bp) protein (397aa)
DNA polymerase IV {ECO:0000256|HAMAP-Rule:MF_01113}; Short=Pol IV {ECO:0000256|HAMAP-Rule:MF_01113};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_01113};; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Nucleotidyltransferase/DNA polymerase involved in DNA repair (EC:2.7.7.7)
DNA polymerase IV n=1 Tax=Clostridium sp. CAG:91 RepID=R6W1G2_9CLOT
L3_083_366G1_scaffold_1076_9
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8115..8810
DNA (696bp) protein (232aa)
Metallopeptidase M23 family n=1 Tax=Clostridium sp. CAG:91 RepID=R6W8T9_9CLOT
Metallopeptidase M23 family {ECO:0000313|EMBL:CDD03249.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
metallopeptidase M23
L3_083_366G1_scaffold_1076_10
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8798..9682
DNA (885bp) protein (295aa)
Metallopeptidase M23 family n=1 Tax=Clostridium sp. CAG:91 RepID=R6W8T9_9CLOT
Metallopeptidase M23 family {ECO:0000313|EMBL:CDD03249.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
metallopeptidase M23
L3_083_366G1_scaffold_1076_11
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9768..11054
DNA (1287bp) protein (429aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase MurA (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Clostridium sp. CAG:91 RepID=R6VWW5_9CLOT
L3_083_366G1_scaffold_1076_12
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11438..12628
DNA (1191bp) protein (397aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Clostridium sp. CAG:91 RepID=R6XA78_9CLOT
L3_083_366G1_scaffold_1076_13
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12738..13319)
DNA (582bp) protein (194aa)
Ribosomal protein L25 Ctc-form n=2 Tax=root RepID=R6WGF5_9CLOT
General stress protein CTC {ECO:0000256|SAAS:SAAS00023360}; 50S ribosomal protein L25 {ECO:0000256|SAAS:SAAS00023358}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
ribosomal protein L25, Ctc-form
L3_083_366G1_scaffold_1076_14
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13707..14312
DNA (606bp) protein (202aa)
Uncharacterized protein n=2 Tax=root RepID=R6W1F8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD03245.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
thrH; phosphoserine phosphatase
L3_083_366G1_scaffold_1076_15
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14556..16256
DNA (1701bp) protein (567aa)
Methyl-accepting chemotaxis protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VWW1_9CLOT
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDD03243.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Methyl-accepting chemotaxis protein
L3_083_366G1_scaffold_1076_16
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16417..17487
DNA (1071bp) protein (357aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Clostridium sp. CAG:91 RepID=R6WGF1_9CLOT
L3_083_366G1_scaffold_1076_17
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17513..17887
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W8T0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD03239.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
L3_083_366G1_scaffold_1076_18
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17903..21676
DNA (3774bp) protein (1258aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
DNA polymerase III catalytic subunit, DnaE type (EC:2.7.7.7)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6XA73_9CLOT
L3_083_366G1_scaffold_1076_19
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21732..22706
DNA (975bp) protein (325aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:0000256|HAMAP-Rule:MF_00339};; Phosphohexokinase {ECO:0000256|HAMAP-Rule:MF_00339}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
6-phosphofructokinase (EC:2.7.1.11)
6-phosphofructokinase n=1 Tax=Clostridium sp. CAG:91 RepID=R6W1E9_9CLOT
L3_083_366G1_scaffold_1076_20
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23001..23810
DNA (810bp) protein (270aa)
rRNA methylase SpoU family n=1 Tax=Clostridium sp. CAG:91 RepID=R6VWV3_9CLOT
rRNA methylase SpoU family {ECO:0000313|EMBL:CDD03233.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
rRNA methylase SpoU family protein
L3_083_366G1_scaffold_1076_21
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24037..24834
DNA (798bp) protein (266aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
proC; pyrroline-5-carboxylate reductase ProC (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase ProC n=1 Tax=Clostridium sp. CAG:91 RepID=R6VRT6_9CLOT
L3_083_366G1_scaffold_1076_22
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25123..26202
DNA (1080bp) protein (360aa)
Cell wall hydrolase n=2 Tax=root RepID=R6WZX5_9CLOT
Cell wall hydrolase {ECO:0000313|EMBL:CDC99722.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
cell wall hydrolase
L3_083_366G1_scaffold_1076_23
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26412..26891
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VYZ1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC99719.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_366G1_scaffold_1076_24
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26973..27896
DNA (924bp) protein (308aa)
SPFH/Band 7/PHB domain protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6W6B8_9CLOT
SPFH/Band 7/PHB domain protein {ECO:0000313|EMBL:CDC99716.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Membrane protease subunits, stomatin/prohibitin homologs
L3_083_366G1_scaffold_1076_25
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28142..29125
DNA (984bp) protein (328aa)
Ornithine carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174}; Short=OTCase {ECO:0000256|HAMAP-Rule:MF_01109};; EC=2.1.3.3 {ECO:0000256|HAMAP-Rule:MF_01109, ECO:0000256|SAAS:SAAS00106174};; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Ornithine carbamoyltransferase n=1 Tax=Clostridium sp. CAG:91 RepID=R6VM75_9CLOT
ornithine carbamoyltransferase
L3_083_366G1_scaffold_1076_26
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

29122..30165
DNA (1044bp) protein (348aa)
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
BirA biotin-[acetyl-CoA-carboxylase] ligase region n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6ELK2_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
L3_083_366G1_scaffold_1076_27
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30287..30649
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:91 RepID=R6VR48_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC99460.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_366G1_scaffold_1076_28
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30646..31416
DNA (771bp) protein (257aa)
Type III pantothenate kinase {ECO:0000256|HAMAP-Rule:MF_01274}; EC=2.7.1.33 {ECO:0000256|HAMAP-Rule:MF_01274};; PanK-III {ECO:0000256|HAMAP-Rule:MF_01274}; Pantothenic acid kinase {ECO:0000256|HAMAP-Rule:MF_01274}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
Type III pantothenate kinase n=1 Tax=Clostridium sp. CAG:91 RepID=R6VLJ1_9CLOT
pantothenate kinase
L3_083_366G1_scaffold_1076_29
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31429..33015
DNA (1587bp) protein (529aa)
Uncharacterized protein n=2 Tax=root RepID=R6WZ67_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC99457.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
hypothetical protein
L3_083_366G1_scaffold_1076_30
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33012..33986
DNA (975bp) protein (325aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
tRNA-dihydrouridine synthase n=1 Tax=Clostridium sp. CAG:91 RepID=R6W5K2_9CLOT
tRNA-U20-dihydrouridine synthase
Displaying items 1-30 of 33 in total

View Taxonomy