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L3_083_366G1_scaffold_17

Search features with annotation key words

Displaying items 1-30 of 135 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_366G1_scaffold_17_1
Alistipes sp. CAG:29, Alistipes, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(1..150)
DNA (150bp) protein (50aa)
Uncharacterized protein n=1 Tax=Alistipes finegoldii (strain DSM 17242 / JCM 16770 / AHN 2437 / CCUG 46020 / CIP 107999) RepID=I3YMC1_ALIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDD24259.1}; TaxID=1262694 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples.;" source="Alistipes sp. CAG:29.;"
L3_083_366G1_scaffold_17_2
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(156..626)
DNA (471bp) protein (157aa)
Nitrogen regulation protein NR(I) n=1 Tax=Alistipes finegoldii CAG:68 RepID=R5UN93_9BACT
Putative fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein {ECO:0000313|EMBL:EFK61294.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
Sigma-54 interaction domain-containing protein
L3_083_366G1_scaffold_17_3
Bacteroides coprophilus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(676..1932)
DNA (1257bp) protein (419aa)
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Bacteroides coprophilus DSM 18228 = JCM 13818 RepID=S0FCE1_9BACE
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein {ECO:0000313|EMBL:EEF78113.1}; TaxID=547042 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprophilus DSM 18228 = JCM 13818.;"
Signal transduction histidine kinase
L3_083_366G1_scaffold_17_4
Bacteroides coprocola, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(1981..2856)
DNA (876bp) protein (292aa)
Radical SAM domain protein n=16 Tax=root RepID=B0MTD5_9BACT
Radical SAM domain protein {ECO:0000313|EMBL:EDV01345.1}; TaxID=470145 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprocola DSM 17136.;"
DNA repair photolyase
L3_083_366G1_scaffold_17_5
Bacteroides sp. 2_1_16, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(2853..3488)
DNA (636bp) protein (212aa)
Radical SAM domain protein n=12 Tax=Bacteroidales RepID=B0MTD6_9BACT
Radical SAM domain protein {ECO:0000313|EMBL:EEZ23824.1}; TaxID=469587 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 2_1_16.;"
radical SAM protein
L3_083_366G1_scaffold_17_6
Bacteroides sp. 1_1_14, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3518..4294)
DNA (777bp) protein (259aa)
Uncharacterized protein n=17 Tax=root RepID=B0MTD7_9BACT
Zn-dependent hydrolase {ECO:0000313|EMBL:EFI06467.1}; TaxID=469585 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides sp. 1_1_14.;"
Zn-dependent hydrolase
L3_083_366G1_scaffold_17_7
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

4425..5324
DNA (900bp) protein (300aa)
Transcriptional regulator, AraC family n=16 Tax=root RepID=B0MTD9_9BACT
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEU52600.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
helix-turn-helix domain-containing protein
L3_083_366G1_scaffold_17_8
Parabacteroides sp. D13, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

5638..6243
DNA (606bp) protein (202aa)
Transcriptional regulator, AraC family n=5 Tax=root PF6_BACFG">RepID=E4VPF6_BACFG
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EEU52602.1}; TaxID=563193 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. D13.;"
transcriptional regulator
L3_083_366G1_scaffold_17_9
Bacteroides intestinalis CAG:315, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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comp(6265..7212)
DNA (948bp) protein (316aa)
Relaxase/mobilization nuclease domain protein n=6 Tax=Bacteroidales RepID=B5CXP4_BACPM
Mobilization protein {ECO:0000313|EMBL:CDD98019.1}; TaxID=1263048 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides intestinalis CAG:315.;"
mobilization protein BmgA
L3_083_366G1_scaffold_17_10
Bacteroides coprophilus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7209..7574)
DNA (366bp) protein (122aa)
Uncharacterized protein n=2 Tax=Bacteroides RepID=R7E8Z8_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EEF78105.1}; TaxID=547042 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprophilus DSM 18228 = JCM 13818.;"
mobilization protein BmgB
L3_083_366G1_scaffold_17_11
Bacteroides coprophilus, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(7751..8689)
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Bacteroides coprophilus DSM 18228 = JCM 13818 RepID=S0FCD2_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EEF78103.1}; TaxID=547042 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides coprophilus DSM 18228 = JCM 13818.;"
DNA primase
L3_083_366G1_scaffold_17_12
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(8947..10152)
DNA (1206bp) protein (402aa)
Uncharacterized protein n=10 Tax=Bacteroidales RepID=B5CXP8_BACPM
Uncharacterized protein {ECO:0000313|EMBL:EFK61282.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
hypothetical protein
L3_083_366G1_scaffold_17_13
Parabacteroides sp. 20_3, Parabacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10429..10818)
DNA (390bp) protein (130aa)
Uncharacterized protein n=10 Tax=Bacteroidales RepID=B0MYG0_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EFK61280.1}; TaxID=469591 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Parabacteroides.;" source="Parabacteroides sp. 20_3.;"
hypothetical protein
L3_083_366G1_scaffold_17_14
Bacteroides plebeius, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(10815..12038)
DNA (1224bp) protein (408aa)
Site-specific recombinase, phage integrase family n=10 Tax=Bacteroidales RepID=B5CXQ1_BACPM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:EDY96186.1}; TaxID=484018 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides plebeius (strain DSM 17135 / JCM 12973 / M2).;"
putative putative phage integrase
L3_083_366G1_scaffold_17_15
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

12342..13823
DNA (1482bp) protein (494aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase n=2 Tax=Bacteroides caccae RepID=A5ZF75_9BACE
L3_083_366G1_scaffold_17_16
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(13952..16819)
DNA (2868bp) protein (956aa)
Chondroitin sulfate ABC lyase n=1 Tax=Bacteroides caccae CL03T12C61 RepID=I8UXE0_9BACE
Chondroitin sulfate ABC lyase {ECO:0000256|PIRNR:PIRNR034515}; Chondroitin ABC eliminase {ECO:0000256|PIRNR:PIRNR034515}; Chondroitin ABC lyase {ECO:0000256|PIRNR:PIRNR034515}; Chondroitinase ABC {ECO:0000256|PIRNR:PIRNR034515}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
Polysaccharide lyase family 8, C-terminal beta-sandwich domain./Lyase, catalytic./Polysaccharide lyase family 8, super-sandwich domain./Lyase, N terminal.
L3_083_366G1_scaffold_17_17
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(16860..18407)
DNA (1548bp) protein (516aa)
Arylsulfatase {ECO:0000313|EMBL:EDM21589.1}; EC=3.1.6.- {ECO:0000313|EMBL:EDM21589.1};; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
Arylsulfatase n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZF73_9BACE
Arylsulfatase A and related enzymes
L3_083_366G1_scaffold_17_18
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(18452..19654)
DNA (1203bp) protein (401aa)
Glycosyl hydrolase, family 88 n=3 Tax=Bacteroides RepID=A5ZF72_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EIY17694.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
unsaturated glucuronyl hydrolase
L3_083_366G1_scaffold_17_19
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

19794..20204
DNA (411bp) protein (137aa)
Phenylacetic acid degradation protein PaaD n=3 Tax=Bacteroides RepID=I8UU35_9BACE
Phenylacetic acid degradation protein PaaD {ECO:0000313|EMBL:EIY17695.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
phenylacetic acid degradation protein
L3_083_366G1_scaffold_17_20
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(20267..21139)
DNA (873bp) protein (291aa)
Uncharacterized protein n=2 Tax=Bacteroides caccae RepID=A5ZF70_9BACE
Uncharacterized protein {ECO:0000313|EMBL:EDM21586.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
Protein of unknown function (DUF3108).
L3_083_366G1_scaffold_17_21
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(21087..23036)
DNA (1950bp) protein (650aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CAG:21 RepID=R5UCP7_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ73389.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_083_366G1_scaffold_17_22
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(23328..24977)
DNA (1650bp) protein (550aa)
SusD family protein n=1 Tax=Bacteroides caccae ATCC 43185 RepID=A5ZF68_9BACE
SusD family protein {ECO:0000313|EMBL:EDM21584.1}; TaxID=411901 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae ATCC 43185.;"
hypothetical protein
L3_083_366G1_scaffold_17_23
Bacteroides caccae, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(24992..27757)
DNA (2766bp) protein (922aa)
SusC/RagA family TonB-linked outer membrane protein n=2 Tax=Bacteroides caccae RepID=I9ECL9_9BACE
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:EIY17699.1}; TaxID=997873 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides caccae CL03T12C61.;"
TonB-dependent receptor
L3_083_366G1_scaffold_17_24
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(27791..29587)
DNA (1797bp) protein (599aa)
Uncharacterized protein n=1 Tax=Bacteroides caccae CAG:21 RepID=R5UXE1_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ73392.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_083_366G1_scaffold_17_25
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(29599..32775)
DNA (3177bp) protein (1059aa)
SusC/RagA family TonB-linked outer membrane protein n=1 Tax=Bacteroides caccae CAG:21 RepID=R5U5P2_9BACE
SusC/RagA family TonB-linked outer membrane protein {ECO:0000313|EMBL:CCZ73393.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
hypothetical protein
L3_083_366G1_scaffold_17_26
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(32862..33095)
DNA (234bp) protein (78aa)
Uncharacterized protein n=3 Tax=Bacteroides RepID=A5ZF63_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CCZ73394.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
L3_083_366G1_scaffold_17_27
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

33208..36315
DNA (3108bp) protein (1036aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Beta galactosidase small chain n=3 Tax=Bacteroides RepID=A5ZF62_9BACE
L3_083_366G1_scaffold_17_28
unknown

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comp(36300..36470)
DNA (171bp) protein (57aa)

This feature has no annotations

L3_083_366G1_scaffold_17_29
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

36498..37673
DNA (1176bp) protein (392aa)
Efflux transporter, RND family, MFP subunit n=3 Tax=Bacteroides RepID=A5ZF61_9BACE
Efflux transporter RND family MFP subunit {ECO:0000313|EMBL:CCZ73396.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
RND family efflux transporter, MFP subunit
L3_083_366G1_scaffold_17_30
Bacteroides caccae CAG:21, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

37689..41117
DNA (3429bp) protein (1143aa)
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter n=2 Tax=Bacteroides RepID=I8UU44_9BACE
Hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter {ECO:0000313|EMBL:CCZ73397.1}; TaxID=1263037 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides caccae CAG:21.;"
Cation/multidrug efflux pump
Displaying items 1-30 of 135 in total

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