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L3_083_366G1_scaffold_122

Search features with annotation key words

Displaying items 1-30 of 106 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_083_366G1_scaffold_122_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..792)
DNA (792bp) protein (264aa)
Replication initiator protein A domain protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8J6_9FIRM
Replication initiator protein A domain protein {ECO:0000313|EMBL:EDP22328.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Replication initiator protein A (RepA) N-terminus.
L3_083_366G1_scaffold_122_2
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2055..2981
DNA (927bp) protein (309aa)
Reverse transcriptase (RNA-dependent DNA polymerase) n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K018_9FIRM
Reverse transcriptase (RNA-dependent DNA polymerase).
Reverse transcriptase (RNA-dependent DNA polymerase) {ECO:0000313|EMBL:CBK99617.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_3
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3447..3650)
DNA (204bp) protein (68aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2S8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97821.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3849..4670)
DNA (822bp) protein (274aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2S9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97822.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4686..5990)
DNA (1305bp) protein (435aa)
Na+/citrate symporter n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2T0_9FIRM
Na+/citrate symporter
Na+/citrate symporter {ECO:0000313|EMBL:CBK97823.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6238..7167)
DNA (930bp) protein (310aa)
Transcriptional regulator n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2T1_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBK97824.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7269..8339)
DNA (1071bp) protein (357aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H6C6_9FIRM
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EEU96454.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
RND family efflux transporter, MFP subunit
L3_083_366G1_scaffold_122_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8928..9245)
DNA (318bp) protein (106aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2T2_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CBK97825.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9445..10452
DNA (1008bp) protein (336aa)
Phosphoglycerate dehydrogenase and related dehydrogenases n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2T3_9FIRM
Phosphoglycerate dehydrogenase and related dehydrogenases
Phosphoglycerate dehydrogenase and related dehydrogenases {ECO:0000313|EMBL:CBK97826.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10517..11419)
DNA (903bp) protein (301aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2T4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97827.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_11
Holdemania filiformis, Holdemania, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

11593..12228
DNA (636bp) protein (212aa)
Uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCP6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEF66250.1}; TaxID=545696 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemania.;" source="Holdemania filiformis DSM 12042.;"
hypothetical protein
L3_083_366G1_scaffold_122_12
Clostridium sp. M62/1, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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12266..12616
DNA (351bp) protein (117aa)
DNA-binding helix-turn-helix protein n=1 Tax=Clostridium sp. M62/1 RepID=D4C872_9CLOT
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFE14760.1}; TaxID=411486 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. M62/1.;"
hypothetical protein
L3_083_366G1_scaffold_122_13
Eubacterium limosum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13291..13470
DNA (180bp) protein (60aa)
Putative uncharacterized protein n=2 Tax=Firmicutes RepID=H1CKZ0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO35995.1}; TaxID=903814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium limosum (strain KIST612).;"
L3_083_366G1_scaffold_122_14
butyrate-producing bacterium SS3/4, Clostridiales, Clostridia, Firmicutes, Bacteria

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13433..14017
DNA (585bp) protein (195aa)
Helix-turn-helix n=2 Tax=root RepID=D7GUA6_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL41398.1}; TaxID=245014 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SS3/4.;"
L3_083_366G1_scaffold_122_15
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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14716..15021
DNA (306bp) protein (102aa)
Uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=G1VJV5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ENY86444.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
hypothetical protein
L3_083_366G1_scaffold_122_16
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15561..17519)
DNA (1959bp) protein (653aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2T7_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CBK97830.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
diguanylate cyclase (GGDEF) domain
L3_083_366G1_scaffold_122_17
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17774..18961)
DNA (1188bp) protein (396aa)
Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2T8_9FIRM
Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family
Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family {ECO:0000313|EMBL:CBK97831.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_18
unknown

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19843..20001
DNA (159bp) protein (53aa)

This feature has no annotations

L3_083_366G1_scaffold_122_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20504..21187
DNA (684bp) protein (228aa)
ATP synthase F0 subcomplex A subunit (EC:3.6.3.14)
ATP synthase subunit a n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2T9_9FIRM
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_20
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21276..21500
DNA (225bp) protein (75aa)
ATP synthase F0 subcomplex C subunit (EC:3.6.3.14)
ATP synthase F0 subcomplex C subunit n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2U0_9FIRM
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242779}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_21
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21518..22009
DNA (492bp) protein (164aa)
ATP synthase, F0 subunit b (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2U1_9FIRM
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_22
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21999..23753
DNA (1755bp) protein (585aa)
proton translocating ATP synthase, F1 alpha subunit (EC:3.6.3.14)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000313|EMBL:CBK97835.1};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
ATP synthase subunit alpha n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2U2_9FIRM
L3_083_366G1_scaffold_122_23
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23740..24621
DNA (882bp) protein (294aa)
ATP synthase F1 subcomplex gamma subunit (EC:3.6.3.14)
ATP synthase gamma chain n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2U3_9FIRM
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_24
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24712..26124
DNA (1413bp) protein (471aa)
ATP synthase F1 subcomplex beta subunit (EC:3.6.3.14)
ATP synthase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01347, ECO:0000313|EMBL:CBK97837.1};; ATP synthase F1 sector subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; F-ATPase subunit beta {ECO:0000256|HAMAP-Rule:MF_01347}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
ATP synthase subunit beta n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2U4_9FIRM
L3_083_366G1_scaffold_122_25
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26124..26531
DNA (408bp) protein (136aa)
ATP synthase F1 subcomplex epsilon subunit (EC:3.6.3.14)
ATP synthase epsilon chain n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2U5_9FIRM
ATP synthase epsilon chain {ECO:0000256|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000256|HAMAP-Rule:MF_00530}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_26
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26752..27753
DNA (1002bp) protein (334aa)
Membrane protease subunits, stomatin/prohibitin homologs n=2 Tax=Faecalibacterium prausnitzii RepID=D4KBL4_9FIRM
Membrane protease subunits, stomatin/prohibitin homologs
Membrane protease subunits, stomatin/prohibitin homologs {ECO:0000313|EMBL:CBL02227.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_083_366G1_scaffold_122_27
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27753..27953
DNA (201bp) protein (67aa)
Uncharacterized protein conserved in bacteria n=2 Tax=Faecalibacterium RepID=D4K2U7_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBK97840.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_28
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28019..28795
DNA (777bp) protein (259aa)
Predicted membrane protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2U8_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBK97841.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_29
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28889..29989)
DNA (1101bp) protein (367aa)
Membrane-associated lipoprotein involved in thiamine biosynthesis n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2U9_9FIRM
Membrane-associated lipoprotein involved in thiamine biosynthesis
Membrane-associated lipoprotein involved in thiamine biosynthesis {ECO:0000313|EMBL:CBK97842.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_083_366G1_scaffold_122_30
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29986..30405)
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K2V0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK97843.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
Displaying items 1-30 of 106 in total

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