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L3_098_000G1_scaffold_150

Search features with annotation key words

Displaying items 1-30 of 81 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_150_1
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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113..2455
DNA (2343bp) protein (781aa)
Glycoside Hydrolase Family 31 protein (EC:3.2.1.-)
Glycoside Hydrolase Family 31 protein {ECO:0000313|EMBL:CCO05987.1}; EC=3.2.1.- {ECO:0000313|EMBL:CCO05987.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glycosyl hydrolase family 31 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7B3_9FIRM
L3_098_000G1_scaffold_150_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2613..3017
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFM5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66696.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_098_000G1_scaffold_150_3
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3007..3888
DNA (882bp) protein (294aa)
Putative membrane protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3C1_9FIRM
Putative membrane protein {ECO:0000313|EMBL:CDC66695.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_098_000G1_scaffold_150_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3958..5028)
DNA (1071bp) protein (357aa)
Twitching motility protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAI5_9FIRM
pilT; Twitching motility protein
Twitching motility protein {ECO:0000313|EMBL:CCO05984.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_098_000G1_scaffold_150_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5056..6735)
DNA (1680bp) protein (560aa)
Putative general secretion pathway protein E n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZR7_9FIRM
pilB; Type II/IV secretion system protein, ATPase
Type II/IV secretion system protein, ATPase {ECO:0000313|EMBL:CCO05983.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_098_000G1_scaffold_150_6
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6895..7719
DNA (825bp) protein (275aa)
pilD; pre-pilin peptidase (EC:3.4.23.43)
Pre-pilin peptidase {ECO:0000313|EMBL:CCO05982.1}; EC=3.4.23.43 {ECO:0000313|EMBL:CCO05982.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Bacterial peptidase A24 N-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7A8_9FIRM
L3_098_000G1_scaffold_150_7
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7847..9721)
DNA (1875bp) protein (625aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFM2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66691.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
pilin related protein
L3_098_000G1_scaffold_150_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9740..10549)
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3B6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66690.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
pilin related protein
L3_098_000G1_scaffold_150_9
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10567..12771)
DNA (2205bp) protein (735aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAI0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66689.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative secreted protein
L3_098_000G1_scaffold_150_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12919..13629)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZR3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66688.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative secreted protein
L3_098_000G1_scaffold_150_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13632..15116)
DNA (1485bp) protein (495aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7A3_9FIRM
pilM; type IV pilus assembly protein PilM
Conserved domain protein {ECO:0000313|EMBL:CDC66687.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_098_000G1_scaffold_150_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15219..16415)
DNA (1197bp) protein (399aa)
Type II secretion system protein F domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFL9_9FIRM
pilC; putative type IV pilus assembly protein PilC
Putative type IV pilus assembly protein PilC {ECO:0000313|EMBL:CCO05976.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_098_000G1_scaffold_150_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16703..17269)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66685.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_098_000G1_scaffold_150_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17358..19394)
DNA (2037bp) protein (679aa)
recG; ATP-dependent DNA helicase RecG (EC:3.6.1.-)
ATP-dependent DNA helicase RecG {ECO:0000313|EMBL:CCO05974.1}; EC=3.6.1.- {ECO:0000313|EMBL:CCO05974.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATP-dependent DNA helicase RecG n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAH5_9FIRM
L3_098_000G1_scaffold_150_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19578..21206)
DNA (1629bp) protein (543aa)
pyrG; CTP synthetase (EC:6.3.4.2)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
CTP synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Z1_9FIRM
L3_098_000G1_scaffold_150_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21571..22953
DNA (1383bp) protein (461aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA34_9FIRM
cell envelope-related transcriptional regulator
Cell envelope-related transcriptional regulator {ECO:0000313|EMBL:CCO05972.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_098_000G1_scaffold_150_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23120..23449
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZG3_9FIRM
csoR; Possible Copper-sensing transcriptional repressor CsoR
Possible Copper-sensing transcriptional repressor CsoR {ECO:0000313|EMBL:CCO05971.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_098_000G1_scaffold_150_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23464..25986
DNA (2523bp) protein (841aa)
copA; Cu2+-exporting ATPase (EC:3.6.3.4)
Copper-exporting ATPase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Z1_9FIRM
Copper-exporting ATPase {ECO:0000313|EMBL:CDC66537.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_098_000G1_scaffold_150_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25899..26387)
DNA (489bp) protein (163aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated endonuclease Cas1 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD34_9FIRM
CRISPR-associated protein, Cas1 family
L3_098_000G1_scaffold_150_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26387..27010)
DNA (624bp) protein (208aa)
CRISPR system CASCADE complex protein CasE n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWI7_9FIRM
CRISPR system CASCADE complex protein CasE {ECO:0000313|EMBL:ERJ96450.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse3 family
L3_098_000G1_scaffold_150_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27019..27669)
DNA (651bp) protein (217aa)
CRISPR system CASCADE complex protein CasD n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3X4_9FIRM
CRISPR system CASCADE complex protein CasD {ECO:0000313|EMBL:ERJ96449.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cas5e family
L3_098_000G1_scaffold_150_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27675..28751)
DNA (1077bp) protein (359aa)
CRISPR system CASCADE complex protein CasC n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MAX3_9FIRM
CRISPR system CASCADE complex protein CasC {ECO:0000313|EMBL:ERJ96448.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse4 family
L3_098_000G1_scaffold_150_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28748..29320)
DNA (573bp) protein (191aa)
CRISPR system CASCADE complex protein CasB n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KVY0_9FIRM
CRISPR system CASCADE complex protein CasB {ECO:0000313|EMBL:ERJ96447.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse2 family
L3_098_000G1_scaffold_150_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29345..30931)
DNA (1587bp) protein (529aa)
CRISPR system CASCADE complex protein CasA n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD29_9FIRM
CRISPR system CASCADE complex protein CasA {ECO:0000313|EMBL:ERJ96446.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated protein, Cse1 family
L3_098_000G1_scaffold_150_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30928..33579)
DNA (2652bp) protein (884aa)
CRISPR-associated helicase Cas3 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3Y2_9FIRM
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:ERJ96459.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CRISPR-associated helicase Cas3
L3_098_000G1_scaffold_150_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33755..36232)
DNA (2478bp) protein (826aa)
Two-component system sensor histidine kinase (EC:2.7.3.-)
Histidine kinase A domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TFA7_9FIRM
Histidine kinase A domain protein {ECO:0000313|EMBL:CDC66536.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_098_000G1_scaffold_150_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36207..36914)
DNA (708bp) protein (236aa)
Response regulator receiver domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T2Y6_9FIRM
Two-component system transcriptional regulator
Two-component system transcriptional regulator {ECO:0000313|EMBL:CCO05968.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_098_000G1_scaffold_150_28
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37092..38519)
DNA (1428bp) protein (476aa)
ABC transporter solute-binding protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TA29_9FIRM
extracellular solute-binding protein
Extracellular solute-binding protein {ECO:0000313|EMBL:CCO05967.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_098_000G1_scaffold_150_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38757..40217)
DNA (1461bp) protein (487aa)
Amino acid carrier protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZG0_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:CDC66533.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
agcS; alanine and/or glycine in symporter (with Na+ and or H+)
L3_098_000G1_scaffold_150_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40305..41300)
DNA (996bp) protein (332aa)
Putative catabolite control protein A n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U6Z0_9FIRM
Putative catabolite control protein A {ECO:0000313|EMBL:CDC66532.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Transcriptional regulator, LacI family
Displaying items 1-30 of 81 in total

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