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L3_098_000G1_scaffold_199

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_199_1
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1..783)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVV1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79854.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_098_000G1_scaffold_199_2
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(908..2071)
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ79853.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_098_000G1_scaffold_199_3
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2073..3155)
DNA (1083bp) protein (361aa)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGH1_9FIRM
L3_098_000G1_scaffold_199_4
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3191..4870)
DNA (1680bp) protein (560aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8S1_9FIRM
L3_098_000G1_scaffold_199_5
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4889..6562)
DNA (1674bp) protein (558aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP36_9FIRM
L3_098_000G1_scaffold_199_6
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6575..7675)
DNA (1101bp) protein (367aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UVU7_9FIRM
L3_098_000G1_scaffold_199_7
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7878..8201)
DNA (324bp) protein (108aa)
Preprotein translocase subunit YajC n=1 Tax=Roseburia sp. CAG:18 RepID=R5UNI7_9FIRM
Preprotein translocase subunit YajC {ECO:0000313|EMBL:CCZ79848.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
preprotein translocase subunit YajC
L3_098_000G1_scaffold_199_8
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8280..9428)
DNA (1149bp) protein (383aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5VGG7_9FIRM
L3_098_000G1_scaffold_199_9
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9455..11218)
DNA (1764bp) protein (588aa)
Glycosidases n=1 Tax=Roseburia sp. CAG:18 RepID=R5V8R6_9FIRM
Glycosidases {ECO:0000313|EMBL:CCZ79846.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Glycosidases
L3_098_000G1_scaffold_199_10
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11339..12439
DNA (1101bp) protein (367aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UP31_9FIRM
L3_098_000G1_scaffold_199_11
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12521..15055)
DNA (2535bp) protein (845aa)
Ig domain protein group 2 domain protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQU4_9FIRM
Ig domain protein group 2 domain protein {ECO:0000313|EMBL:CCZ78124.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_098_000G1_scaffold_199_12
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15174..16427)
DNA (1254bp) protein (418aa)
Peptidase U32 n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJC9_9FIRM
Peptidase U32 {ECO:0000313|EMBL:CCZ78125.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
peptidase U32
L3_098_000G1_scaffold_199_13
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16414..17079)
DNA (666bp) protein (222aa)
O-methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3X9_9FIRM
O-methyltransferase {ECO:0000313|EMBL:CCZ78126.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted O-methyltransferase
L3_098_000G1_scaffold_199_14
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17088..17264)
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBL5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78127.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Predicted periplasmic solute-binding protein
L3_098_000G1_scaffold_199_15
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17272..18945)
DNA (1674bp) protein (558aa)
Predicted hydrolase of the metallo-beta-lactamase superfamily n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIN2_9FIRM
Predicted hydrolase of the metallo-beta-lactamase superfamily {ECO:0000313|EMBL:CCZ78128.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
putative hydrolase of the metallo-beta-lactamase superfamily
L3_098_000G1_scaffold_199_16
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18972..19235)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQU8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78129.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Protein of unknown function (DUF1292).
L3_098_000G1_scaffold_199_17
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19255..19692)
DNA (438bp) protein (146aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Putative Holliday junction resolvase n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJD3_9FIRM
hypothetical protein
L3_098_000G1_scaffold_199_18
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19710..19973)
DNA (264bp) protein (88aa)
UPF0297 protein BN518_01693 n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3Y3_9FIRM
UPF0297 protein BN518_01693 {ECO:0000256|HAMAP-Rule:MF_01507}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
hypothetical protein
L3_098_000G1_scaffold_199_19
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20053..21360)
DNA (1308bp) protein (436aa)
MiaB-like tRNA modifying enzyme (EC:1.3.1.74)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBL9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78132.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_098_000G1_scaffold_199_20
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21479..21715
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIN7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78133.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
PTS HPr component phosphorylation site.
L3_098_000G1_scaffold_199_21
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21791..22975)
DNA (1185bp) protein (395aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094284}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021, ECO:0000256|SAAS:SAAS00094270};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiamine biosynthesis protein ThiI {ECO:0000256|HAMAP-Rule:MF_00021}; tRNA 4-thiouridine synthase {ECO:0000256|HAMAP-Rule:MF_00021}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Probable tRNA sulfurtransferase n=2 Tax=root RepID=R5UQV1_9FIRM
thiazole biosynthesis/tRNA modification protein ThiI
L3_098_000G1_scaffold_199_22
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22991..24145)
DNA (1155bp) protein (385aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJD6_9FIRM
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes {ECO:0000313|EMBL:CCZ78135.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_098_000G1_scaffold_199_23
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24157..24891)
DNA (735bp) protein (245aa)
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJD6_9FIRM
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes {ECO:0000313|EMBL:CCZ78135.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_098_000G1_scaffold_199_24
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24901..25860)
DNA (960bp) protein (320aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
Ribosomal protein L11 methyltransferase n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3Y6_9FIRM
ribosomal protein L11 methyltransferase
L3_098_000G1_scaffold_199_25
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26013..26231
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBM3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ78137.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
L3_098_000G1_scaffold_199_26
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26280..26699)
DNA (420bp) protein (140aa)
DnaJ domain n=1 Tax=Roseburia sp. CAG:18 RepID=R5UIP1_9FIRM
DnaJ domain {ECO:0000313|EMBL:CCZ78138.1}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
DnaJ domain.
L3_098_000G1_scaffold_199_27
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26797..27966)
DNA (1170bp) protein (390aa)
Chaperone protein DnaJ n=1 Tax=Roseburia sp. CAG:18 RepID=R5UQV4_9FIRM
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
chaperone protein DnaJ
L3_098_000G1_scaffold_199_28
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28043..29947)
DNA (1905bp) protein (635aa)
Chaperone protein DnaK n=1 Tax=Roseburia sp. CAG:18 RepID=R5UJE0_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
chaperone protein DnaK
L3_098_000G1_scaffold_199_29
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30035..30670)
DNA (636bp) protein (212aa)
Protein GrpE n=1 Tax=Roseburia sp. CAG:18 RepID=R5V3Z0_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
molecular chaperone GrpE
L3_098_000G1_scaffold_199_30
Roseburia sp. CAG:18, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30684..31745)
DNA (1062bp) protein (354aa)
Heat-inducible transcription repressor hrcA n=1 Tax=Roseburia sp. CAG:18 RepID=R5VBM6_9FIRM
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1262941 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:18.;"
heat-inducible transcription repressor
Displaying items 1-30 of 75 in total

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