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L3_098_000G1_scaffold_348

Search features with annotation key words

Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_348_1
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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129..659
DNA (531bp) protein (177aa)
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIT0_CLOPH
ECF subfamily RNA polymerase sigma-24 factor
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABX43943.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_348_2
unknown

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643..1602
DNA (960bp) protein (320aa)

This feature has no annotations

L3_098_000G1_scaffold_348_3
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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1676..2254
DNA (579bp) protein (193aa)
Thymidine kinase {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544}; EC=2.7.1.21 {ECO:0000256|HAMAP-Rule:MF_00124, ECO:0000256|RuleBase:RU000544};; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
thymidine kinase (EC:2.7.1.21)
Thymidine kinase n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5ICC5_9CLOT
L3_098_000G1_scaffold_348_4
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2407..2955
DNA (549bp) protein (183aa)
Transcriptional regulator, AbrB family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KR48_CLOPH
AbrB family transcriptional regulator
Transcriptional regulator, AbrB family {ECO:0000313|EMBL:ABX40516.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_348_5
unknown

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3093..3296
DNA (204bp) protein (68aa)

This feature has no annotations

L3_098_000G1_scaffold_348_6
Clostridium sp. CAG:505, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3471..4316
DNA (846bp) protein (282aa)
MazG family protein n=1 Tax=Clostridium sp. CAG:505 RepID=R7AJ87_9CLOT
MazG family protein {ECO:0000313|EMBL:CDD60898.1}; TaxID=1262814 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:505.;"
MazG family protein
L3_098_000G1_scaffold_348_7
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4348..4623
DNA (276bp) protein (92aa)
Histone family protein DNA-binding protein n=1 Tax=Clostridium sp. CAG:411 RepID=R7HTN1_9CLOT
Histone family protein DNA-binding protein {ECO:0000313|EMBL:CDE42318.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
Bacterial nucleoid DNA-binding protein
L3_098_000G1_scaffold_348_8
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4759..4998
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:510 RepID=R6C6L7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDA68759.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)
L3_098_000G1_scaffold_348_9
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5038..5352
DNA (315bp) protein (105aa)
Sporulation protein YabP n=1 Tax=Clostridium sp. CAG:91 RepID=R6VRU7_9CLOT
Sporulation protein YabP {ECO:0000313|EMBL:CDD01378.1}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
sporulation protein YabP
L3_098_000G1_scaffold_348_10
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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5370..5891
DNA (522bp) protein (174aa)
Spore cortex biosynthesis protein YabQ n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N1ZTB8_9FIRM
Spore cortex biosynthesis protein YabQ {ECO:0000313|EMBL:EMZ20287.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
Spore cortex protein YabQ (Spore_YabQ).
L3_098_000G1_scaffold_348_11
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5910..6230
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KK13_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN30696.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
septum formation initiator
L3_098_000G1_scaffold_348_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6745..9081
DNA (2337bp) protein (779aa)
protein serine/threonine phosphatase (EC:3.1.3.16)
Stage II sporulation protein E protein serine/threonine phosphatase n=1 Tax=Roseburia sp. CAG:309 RepID=R6YNE4_9FIRM
Stage II sporulation protein E protein serine/threonine phosphatase {ECO:0000313|EMBL:CDD35380.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
L3_098_000G1_scaffold_348_13
Clostridium sp. CAG:91, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9334..10887
DNA (1554bp) protein (518aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043109}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161, ECO:0000256|SAAS:SAAS00043112};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1262845 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:91.;"
tilS; tRNA(Ile)-lysidine synthase TilS (EC:6.3.4.19)
tRNA(Ile)-lysidine synthase n=2 Tax=root RepID=R6WB09_9CLOT
L3_098_000G1_scaffold_348_14
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

10889..11413
DNA (525bp) protein (175aa)
hypoxanthine phosphoribosyltransferase (EC:2.4.2.8)
Hypoxanthine phosphoribosyltransferase n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6CGZ7_9FIRM
Hypoxanthine phosphoribosyltransferase {ECO:0000313|EMBL:CDA64522.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
L3_098_000G1_scaffold_348_15
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11505..13373
DNA (1869bp) protein (623aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
ATP-dependent zinc metalloprotease FtsH n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KR62_CLOPH
L3_098_000G1_scaffold_348_16
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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14184..16298
DNA (2115bp) protein (705aa)
Glycosidases (EC:3.2.1.20)
Putative neopullulanase 1 n=1 Tax=Clostridium sp. CAG:411 RepID=R7HV80_9CLOT
Putative neopullulanase 1 {ECO:0000313|EMBL:CDE42137.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
L3_098_000G1_scaffold_348_17
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17098..17556)
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMM1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEZ91171.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
integrase family protein
L3_098_000G1_scaffold_348_18
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17785..18690
DNA (906bp) protein (302aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KR18_CLOPH
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABX43497.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_348_19
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18931..19413)
DNA (483bp) protein (161aa)
Putative uncharacterized protein n=1 Tax=Clostridium citroniae WAL-17108 RepID=G5HMM1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KEZ91171.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
Site-specific recombinase XerD
L3_098_000G1_scaffold_348_20
unknown

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comp(19364..19474)
DNA (111bp) protein (37aa)

This feature has no annotations

L3_098_000G1_scaffold_348_21
unknown

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comp(19566..19793)
DNA (228bp) protein (76aa)

This feature has no annotations

L3_098_000G1_scaffold_348_22
RIFOXYC1_FULL_Bdellovibrionales_37_79_curated, Bacteroivoracaceae, Bdellovibrionales, Bdellovibrio, Bacteria

Not on your lists

20481..21476
DNA (996bp) protein (332aa)
Radical SAM domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PS04_9FIRM
radical SAM protein
Tax=RIFOXYC1_FULL_Bdellovibrionales_37_79_curated
L3_098_000G1_scaffold_348_23
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21900..22079
DNA (180bp) protein (60aa)
Transglutaminase domain-containing protein n=1 Tax=Clostridium autoethanogenum DSM 10061 RepID=U5RRW0_9CLOT
transglutaminase domain-containing protein
Transglutaminase domain-containing protein {ECO:0000313|EMBL:AGY75312.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L3_098_000G1_scaffold_348_24
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22125..22511
DNA (387bp) protein (129aa)
Transglutaminase domain-containing protein n=1 Tax=Clostridium autoethanogenum DSM 10061 RepID=U5RRW0_9CLOT
transglutaminase domain-containing protein
Transglutaminase domain-containing protein {ECO:0000313|EMBL:AGY75312.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L3_098_000G1_scaffold_348_25
unknown

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22568..22699
DNA (132bp) protein (44aa)

This feature has no annotations

L3_098_000G1_scaffold_348_26
unknown

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22696..22827
DNA (132bp) protein (44aa)

This feature has no annotations

L3_098_000G1_scaffold_348_27
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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22952..23731
DNA (780bp) protein (260aa)
hypothetical protein n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2C69D
Acyltransferase {ECO:0000313|EMBL:EMS71369.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
L3_098_000G1_scaffold_348_28
Enterococcus gilvus, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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23752..24585
DNA (834bp) protein (278aa)
Uncharacterized protein n=1 Tax=Enterococcus gilvus ATCC BAA-350 RepID=R2XTE0_9ENTE
Uncharacterized protein {ECO:0000313|EMBL:EOI58209.1}; TaxID=1158614 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus.;" source="Enterococcus gilvus ATCC BAA-350.;"
aminoglycoside phosphotransferase
L3_098_000G1_scaffold_348_29
unknown

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24723..25136
DNA (414bp) protein (138aa)

This feature has no annotations

L3_098_000G1_scaffold_348_30
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25336..25719
DNA (384bp) protein (128aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRT9_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX43583.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Displaying items 1-30 of 62 in total

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