ggKbase home page

L3_098_000G1_scaffold_467

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_467_1
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(187..813)
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KJV9_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41114.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_2
Clostridium sp. CAG:75, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1280..2158
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:75 RepID=R5SN51_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ54518.1}; TaxID=1262836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:75.;"
L3_098_000G1_scaffold_467_3
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(2224..2895)
DNA (672bp) protein (224aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Phosphoglycolate phosphatase n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6CDP2_9FIRM
Phosphoglycolate phosphatase {ECO:0000313|EMBL:CDA63407.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
L3_098_000G1_scaffold_467_4
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3006..5423)
DNA (2418bp) protein (806aa)
DEAD_2 domain protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRY0_CLOPH
DEAD/DEAH box helicase
DEAD_2 domain protein {ECO:0000313|EMBL:ABX40611.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_5
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5628..6380)
DNA (753bp) protein (251aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NJ17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ04155.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
L3_098_000G1_scaffold_467_6
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6662..7000
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Clostridium hathewayi WAL-18680 RepID=G5IE71_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EHI60211.1}; TaxID=742737 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi WAL-18680.;"
Protein of unknown function (DUF1292).
L3_098_000G1_scaffold_467_7
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7049..7762)
DNA (714bp) protein (238aa)
Glucosamine-6-phosphate deaminase {ECO:0000255|HAMAP-Rule:MF_01241}; EC=3.5.99.6 {ECO:0000255|HAMAP-Rule:MF_01241};; GlcN6P deaminase {ECO:0000255|HAMAP-Rule:MF_01241}; Short=GNPDA {ECO:0000255|HAMAP-Rule:MF_01241};; Glucosamine-6-phosphate isomerase {ECO:0000255|HAMAP-Rule:MF_01241}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Glucosamine-6-phosphate deaminase n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=NAGB_CLOPH
glucosamine-6-phosphate isomerase
L3_098_000G1_scaffold_467_8
Clostridium novyi, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7925..8434)
DNA (510bp) protein (170aa)
hypothetical protein n=1 Tax=Bacillus sp. AP8 RepID=UPI0002EF21B8
Uncharacterized protein {ECO:0000313|EMBL:KGM96897.1}; TaxID=1444289 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium novyi A str. 4552.;"
hypothetical protein
L3_098_000G1_scaffold_467_9
unknown

Not on your lists

comp(8498..8707)
DNA (210bp) protein (70aa)

This feature has no annotations

L3_098_000G1_scaffold_467_10
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8854..10305
DNA (1452bp) protein (484aa)
Uncharacterized protein n=1 Tax=Clostridium bolteae CAG:59 RepID=R5F127_9CLOT
Resolvase N-terminal domain protein {ECO:0000313|EMBL:CCY42980.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
site-specific recombinase
L3_098_000G1_scaffold_467_11
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10454..12625)
DNA (2172bp) protein (724aa)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase Cphy0577; EC=2.4.1.211;; D-galactosyl-1,4-L-rhamnose phosphorylase; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase Cphy0577 n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=GAHP2_CLOPH
hypothetical protein
L3_098_000G1_scaffold_467_12
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12742..12918)
DNA (177bp) protein (59aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIW4_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX40963.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_13
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12926..13804)
DNA (879bp) protein (293aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIW3_CLOPH
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABX40962.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_14
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13817..14707)
DNA (891bp) protein (297aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIW2_CLOPH
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABX40961.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_15
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14801..16195)
DNA (1395bp) protein (465aa)
Extracellular solute-binding protein family 1 n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIW1_CLOPH
extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ABX40960.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_16
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16372..17286
DNA (915bp) protein (305aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIW0_CLOPH
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ABX40959.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_17
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17296..18309)
DNA (1014bp) protein (338aa)
UDP-glucose 4-epimerase n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIV9_CLOPH
UDP-glucose 4-epimerase
UDP-glucose 4-epimerase {ECO:0000313|EMBL:ABX40958.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_18
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18309..19433)
DNA (1125bp) protein (375aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIV8_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX40957.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_19
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19539..20456)
DNA (918bp) protein (306aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIV7_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX40956.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_20
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20773..21792
DNA (1020bp) protein (340aa)
Transcriptional regulator, LacI family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KIV6_CLOPH
LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABX40955.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_21
Lachnospiraceae bacterium 3-2, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21770..22237
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3-2 RepID=R9MKZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS71705.1}; TaxID=1235799 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-2.;"
Putative peptidoglycan binding domain.
L3_098_000G1_scaffold_467_22
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22480..23469)
DNA (990bp) protein (330aa)
Polysaccharide deacetylase n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KI91_CLOPH
polysaccharide deacetylase
Polysaccharide deacetylase {ECO:0000313|EMBL:ABX40925.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_23
Lachnospiraceae bacterium TWA4, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23774..24523
DNA (750bp) protein (250aa)
Uncharacterized protein n=1 Tax=Clostridium nexile CAG:348 RepID=R6PI43_9CLOT
TWA4_scaffold00001, whole genome shotgun sequence {ECO:0000313|EMBL:KIR01623.1}; TaxID=1392836 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium TWA4.;"
DnaJ domain.
L3_098_000G1_scaffold_467_24
[Clostridium] termitidis, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24536..25378
DNA (843bp) protein (281aa)
Uncharacterized protein n=1 Tax=Clostridium termitidis CT1112 RepID=S0FUG3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EMS72168.1}; TaxID=1195236 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] termitidis CT1112.;"
hypothetical protein
L3_098_000G1_scaffold_467_25
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25743..26276
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I1Z4_CLOCE
Membrane protein {ECO:0000313|EMBL:KGG80464.1}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azorensis H53214.;"
hypothetical protein
L3_098_000G1_scaffold_467_26
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26350..27627)
DNA (1278bp) protein (426aa)
seryl-tRNA synthetase (EC:6.1.1.11)
Seryl-tRNA synthetase {ECO:0000313|EMBL:ABX41493.1}; EC=6.1.1.11 {ECO:0000313|EMBL:ABX41493.1};; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Seryl-tRNA synthetase n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KMP8_CLOPH
L3_098_000G1_scaffold_467_27
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28161..28847)
DNA (687bp) protein (229aa)
Two-component system OmpR family phosphate regulon response regulator OmpR n=1 Tax=Eubacterium sp. CAG:252 RepID=R6KYZ2_9FIRM
Regulatory protein VanR {ECO:0000313|EMBL:AJG97379.1}; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
two-component system OmpR family phosphate regulon response regulator OmpR
L3_098_000G1_scaffold_467_28
Clostridium beijerinckii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28940..30370)
DNA (1431bp) protein (477aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1520 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium beijerinckii (Clostridium MP).;"
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:38 RepID=R7HAP5_9FIRM
hypothetical protein
L3_098_000G1_scaffold_467_29
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30616..30987
DNA (372bp) protein (124aa)
Transcriptional regulator, GntR family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KQF4_CLOPH
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABX40463.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_467_30
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30991..32382
DNA (1392bp) protein (464aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5I3R7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY31642.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
hypothetical protein
Displaying items 1-30 of 45 in total

View Taxonomy