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L3_098_000G1_scaffold_638

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_638_1
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(162..521)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1ATP6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EOD00002.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
hypothetical protein
L3_098_000G1_scaffold_638_2
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(545..1621)
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Bacillus pumilus RepID=UPI0002F77802
Uncharacterized protein {ECO:0000313|EMBL:EOD00003.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
L3_098_000G1_scaffold_638_3
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1614..2534)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Bacillus pumilus RepID=UPI0002FB9482
Ribonuclease HI-related protein {ECO:0000313|EMBL:EOD00004.1}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;" source="Caldisalinibacter kiritimatiensis.;"
ribonuclease HI
L3_098_000G1_scaffold_638_4
unknown

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comp(2708..2932)
DNA (225bp) protein (75aa)

This feature has no annotations

L3_098_000G1_scaffold_638_5
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2887..4119)
DNA (1233bp) protein (411aa)
Cold-shock protein DNA-binding n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TFM5_9CLOT
Cold-shock protein DNA-binding {ECO:0000313|EMBL:EGD46757.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
L3_098_000G1_scaffold_638_6
unknown

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comp(4885..4977)
DNA (93bp) protein (31aa)

This feature has no annotations

L3_098_000G1_scaffold_638_7
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5410..6315)
DNA (906bp) protein (302aa)
homoserine O-succinyltransferase (EC:2.3.1.46)
Homoserine O-succinyltransferase {ECO:0000255|HAMAP-Rule:MF_00295}; EC=2.3.1.46 {ECO:0000255|HAMAP-Rule:MF_00295};; Homoserine O-transsuccinylase {ECO:0000255|HAMAP-Rule:MF_00295}; Short=HTS {ECO:0000255|HAMAP-Rule:MF_00295};; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Homoserine O-succinyltransferase n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=META_CLOPH
L3_098_000G1_scaffold_638_8
Clostridium sp. BNL1100, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6470..8425)
DNA (1956bp) protein (652aa)
DNA ligase {ECO:0000256|HAMAP-Rule:MF_01588}; EC=6.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01588};; Polydeoxyribonucleotide synthase [NAD(+)] {ECO:0000256|HAMAP-Rule:MF_01588}; TaxID=755731 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. BNL1100.;"
DNA ligase n=1 Tax=Clostridium sp. BNL1100 RepID=H2JED1_9CLOT
NAD-dependent DNA ligase
L3_098_000G1_scaffold_638_9
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8517..9245)
DNA (729bp) protein (243aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
ribosomal large subunit pseudouridine synthase F (EC:5.4.99.- 5.4.99.12)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:411 RepID=R7I6T3_9CLOT
L3_098_000G1_scaffold_638_10
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9258..10124)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:411 RepID=R7IA09_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE47347.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
hypothetical protein
L3_098_000G1_scaffold_638_11
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10551..11474)
DNA (924bp) protein (308aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KPL4_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX43288.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_638_12
Eubacterium sp. CAG:841, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11516..12217)
DNA (702bp) protein (234aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:841 RepID=R7FTD5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE16997.1}; TaxID=1262894 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:841.;"
L3_098_000G1_scaffold_638_13
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12269..13852)
DNA (1584bp) protein (528aa)
Diguanylate cyclase/phosphodiesterase n=1 Tax=Clostridium sp. CAG:411 RepID=R7HV29_9CLOT
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDE43220.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
diguanylate cyclase/phosphodiesterase
L3_098_000G1_scaffold_638_14
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14218..16068
DNA (1851bp) protein (617aa)
Uncharacterized protein n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HMG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY30935.1}; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
diguanylate cyclase (GGDEF) domain
L3_098_000G1_scaffold_638_15
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16175..17617)
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9NEV7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78537.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
two component AraC family transcriptional regulator
L3_098_000G1_scaffold_638_16
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17644..19437)
DNA (1794bp) protein (598aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N634_9FIRM
histidine kinase internal region
L3_098_000G1_scaffold_638_17
Eubacterium sp. CAG:603, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19566..21725)
DNA (2160bp) protein (720aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:603 RepID=R5NIN3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCZ03618.1}; TaxID=1262891 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:603.;"
methyl-accepting chemotaxis sensory transducer
L3_098_000G1_scaffold_638_18
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21887..23578)
DNA (1692bp) protein (564aa)
Extracellular solute-binding protein family 1 n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLB9_CLOPH
extracellular solute-binding protein
Extracellular solute-binding protein family 1 {ECO:0000313|EMBL:ABX41248.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_638_19
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23608..24507)
DNA (900bp) protein (300aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLB8_CLOPH
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABX41247.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_638_20
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24518..25486)
DNA (969bp) protein (323aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLB7_CLOPH
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABX41246.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_638_21
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25582..26193)
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLB6_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41245.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_638_22
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26318..27658)
DNA (1341bp) protein (447aa)
Glycoside hydrolase family 30 n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLB5_CLOPH
glycoside hydrolase family protein
Glycoside hydrolase family 30 {ECO:0000313|EMBL:ABX41244.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_638_23
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27659..30817)
DNA (3159bp) protein (1053aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLC2_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41251.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_638_24
Lachnospiraceae bacterium 10-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30851..33607)
DNA (2757bp) protein (919aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae bacterium 10-1 RepID=R9N5F5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS78544.1}; TaxID=1235800 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 10-1.;"
cellulase
L3_098_000G1_scaffold_638_25
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33813..35198)
DNA (1386bp) protein (462aa)
Glutamate synthase (NADPH), homotetrameric n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KPL7_CLOPH
oxidoreductase
Glutamate synthase (NADPH), homotetrameric {ECO:0000313|EMBL:ABX43291.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_638_26
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35198..36088)
DNA (891bp) protein (297aa)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Clostridium sp. CAG:411 RepID=R7I2I9_9CLOT
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:CDE45691.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
ferredoxin-NADP(+) reductase subunit alpha
L3_098_000G1_scaffold_638_27
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36336..37508)
DNA (1173bp) protein (391aa)
NADPH-dependent butanol dehydrogenase n=2 Tax=Clostridium RepID=A7VV23_9CLOT
NADPH-dependent butanol dehydrogenase {ECO:0000313|EMBL:CDC04943.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium leptum CAG:27.;"
Alcohol dehydrogenase, class IV
L3_098_000G1_scaffold_638_28
Dorea longicatena CAG:42, Dorea, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38045..38737
DNA (693bp) protein (231aa)
Response regulator receiver domain protein n=1 Tax=Dorea longicatena CAG:42 RepID=R7FZK5_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:CDE20659.1}; TaxID=1263074 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Dorea; environmental samples.;" source="Dorea longicatena CAG:42.;"
winged helix family two component transcriptional regulator
L3_098_000G1_scaffold_638_29
Firmicutes bacterium CAG:212, Firmicutes, Bacteria

Not on your lists

38810..41080
DNA (2271bp) protein (757aa)
Sensory transduction protein n=1 Tax=Firmicutes bacterium CAG:212 RepID=R5XMC9_9FIRM
Sensory transduction protein {ECO:0000313|EMBL:CDA13689.1}; TaxID=1263009 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:212.;"
Signal transduction histidine kinase
L3_098_000G1_scaffold_638_30
Clostridium bornimense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(41139..41507)
DNA (369bp) protein (123aa)
ArsR-family transcriptional regulator n=175 Tax=Clostridium difficile RepID=C9XQT0_CLODC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM68013.1}; TaxID=1216932 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium bornimense.;"
Displaying items 1-30 of 34 in total

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