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L3_098_000G1_scaffold_657

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_657_1
Desulfosporosinus youngiae, Desulfosporosinus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(245..856)
DNA (612bp) protein (204aa)
Putative uncharacterized protein n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y2M9_9FIRM
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ88292.1}; TaxID=768710 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfosporosinus.;" source="Desulfosporosinus youngiae DSM 17734.;"
hypothetical protein
L3_098_000G1_scaffold_657_2
unknown

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1014..1247
DNA (234bp) protein (78aa)

This feature has no annotations

L3_098_000G1_scaffold_657_3
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1661..1894)
DNA (234bp) protein (78aa)
Putative uncharacterized protein n=1 Tax=Clostridium sp. D5 RepID=F0YVQ0_9CLOT
Putative uncharacterized protein {ECO:0000313|EMBL:EGB94968.1}; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
L3_098_000G1_scaffold_657_4
Hungatella hathewayi, Hungatella, Clostridiales, Clostridia, Firmicutes, Bacteria

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2051..2197
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Clostridium hathewayi 12489931 RepID=N9W6H2_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY98605.1}; TaxID=999412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Hungatella.;" source="Hungatella hathewayi 12489931.;"
L3_098_000G1_scaffold_657_5
Ruminococcus sp. CAG:60, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2418..2645
DNA (228bp) protein (76aa)
phosphocarrier protein HPr n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002F29A99
Uncharacterized protein {ECO:0000313|EMBL:CCY32560.1}; TaxID=1262964 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:60.;"
PTS HPr component phosphorylation site.
L3_098_000G1_scaffold_657_6
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2768..5215)
DNA (2448bp) protein (816aa)
Diguanylate cyclase/phosphodiesterase domain 2 n=1 Tax=Clostridium sp. CAG:127 RepID=R5PDY2_9CLOT
Diguanylate cyclase/phosphodiesterase domain 2 {ECO:0000313|EMBL:CCZ08106.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
L3_098_000G1_scaffold_657_7
Clostridium sp. CAG:632, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5406..6290)
DNA (885bp) protein (295aa)
Putative mutarotase n=1 Tax=Clostridium sp. CAG:632 RepID=R5KBR8_9CLOT
Putative mutarotase {ECO:0000313|EMBL:CCY58412.1}; TaxID=1262830 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:632.;"
aldose 1-epimerase
L3_098_000G1_scaffold_657_8
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6526..8733
DNA (2208bp) protein (736aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
ATP-dependent DNA helicase rep n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KRD0_CLOPH
ATP-dependent DNA helicase rep
L3_098_000G1_scaffold_657_9
Coprobacillus sp. 8_2_54BFAA, Coprobacillus, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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8858..10261
DNA (1404bp) protein (468aa)
Amino acid carrier protein n=3 Tax=Coprobacillus RepID=C3RJC8_9FIRM
Amino acid carrier protein {ECO:0000313|EMBL:EHQ45424.1}; TaxID=469597 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Coprobacillus.;" source="Coprobacillus sp. 8_2_54BFAA.;"
amino acid carrier protein
L3_098_000G1_scaffold_657_10
Roseburia sp. CAG:303, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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10800..13214
DNA (2415bp) protein (805aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1262944 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:303.;"
leucyl-tRNA synthetase, eubacterial and mitochondrial family (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Roseburia sp. CAG:303 RepID=R7INE4_9FIRM
L3_098_000G1_scaffold_657_11
Clostridium sp. CAG:167, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(13340..13609)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:167 RepID=R5VU63_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ91344.1}; TaxID=1262777 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:167.;"
hypothetical protein
L3_098_000G1_scaffold_657_12
Dictyostelium discoideum, Dictyostelium, Dictyosteliida, Eukaryota

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comp(13674..14912)
DNA (1239bp) protein (413aa)
Probable serine/threonine-protein kinase roco9; EC=2.7.11.1;; Ras of complex proteins and C-terminal of roc 9; TaxID=44689 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium.;" source="Dictyostelium discoideum (Slime mold).;"
RWP-RK domain-containing protein n=1 Tax=Dictyostelium discoideum RepID=Q54VA4_DICDI
serine/threonine kinase
L3_098_000G1_scaffold_657_13
Clostridium hathewayi CAG:224, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15118..15597)
DNA (480bp) protein (160aa)
S-ribosylhomocysteine lyase {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059609}; EC=4.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00091, ECO:0000256|SAAS:SAAS00059628};; AI-2 synthesis protein {ECO:0000256|HAMAP-Rule:MF_00091}; Autoinducer-2 production protein LuxS {ECO:0000256|HAMAP-Rule:MF_00091}; TaxID=1263067 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium hathewayi CAG:224.;"
S-ribosylhomocysteinase (EC:4.4.1.21)
S-ribosylhomocysteine lyase n=1 Tax=Clostridium hathewayi CAG:224 RepID=R5T4J5_9CLOT
L3_098_000G1_scaffold_657_14
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15722..16099)
DNA (378bp) protein (126aa)
glyoxalase n=1 Tax=Acetivibrio cellulolyticus RepID=UPI0001E2F086
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:CEQ28420.1}; TaxID=1505 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sordellii.;"
lactoylglutathione lyase family protein
L3_098_000G1_scaffold_657_15
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16357..16701
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KQN8_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41951.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_657_16
Lachnospiraceae bacterium 5_1_57FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16839..18719)
DNA (1881bp) protein (627aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 5_1_57FAA RepID=F7KSU0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN38393.1}; TaxID=658085 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_57FAA.;"
Spermidine/putrescine-binding periplasmic protein
L3_098_000G1_scaffold_657_17
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18713..19528)
DNA (816bp) protein (272aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLF2_CLOPH
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABX41281.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_657_18
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19521..20630)
DNA (1110bp) protein (370aa)
Spermidine/putrescine import ATP-binding protein PotA {ECO:0000256|HAMAP-Rule:MF_01726}; EC=3.6.3.31 {ECO:0000256|HAMAP-Rule:MF_01726};; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Spermidine/putrescine ABC transporter ATPase subunit n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLF3_CLOPH
spermidine/putrescine ABC transporter ATPase
L3_098_000G1_scaffold_657_19
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20638..21177)
DNA (540bp) protein (180aa)
Transcriptional regulator, XRE family n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KLF4_CLOPH
XRE family transcriptional regulator
Transcriptional regulator, XRE family {ECO:0000313|EMBL:ABX41283.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_657_20
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21618..22718)
DNA (1101bp) protein (367aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Chorismate synthase n=1 Tax=Roseburia sp. CAG:380 RepID=R6VTT5_9FIRM
chorismate synthase
L3_098_000G1_scaffold_657_21
unknown

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23101..23319
DNA (219bp) protein (73aa)

This feature has no annotations

L3_098_000G1_scaffold_657_22
Clostridium sp. CAG:43, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23426..23653)
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:43 RepID=R7AZS7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDD55462.1}; TaxID=1262805 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:43.;"
keratin associated protein 6-2-like protein
L3_098_000G1_scaffold_657_23
Clostridium sp. D5, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24017..24553
DNA (537bp) protein (179aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109};; TaxID=556261 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. D5.;"
Shikimate kinase n=1 Tax=Clostridium sp. D5 RepID=F0YYC2_9CLOT
chorismate mutase
L3_098_000G1_scaffold_657_24
[Clostridium] asparagiforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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24587..25600
DNA (1014bp) protein (338aa)
Peptidase, S8/S53 family {ECO:0000313|EMBL:EEG56887.1}; EC=3.4.21.- {ECO:0000313|EMBL:EEG56887.1};; TaxID=518636 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium asparagiforme] DSM 15981.;"
Peptidase, S8/S53 family n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVJ8_9CLOT
peptidase S8/S53 subtilisin kexin sedolisin
L3_098_000G1_scaffold_657_25
butyrate-producing bacterium SM4/1, Clostridiales, Clostridia, Firmicutes, Bacteria

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25767..26669
DNA (903bp) protein (301aa)
Sugar kinases, ribokinase family n=1 Tax=butyrate-producing bacterium SM4/1 RepID=D4MS66_9FIRM
Sugar kinases, ribokinase family
Sugar kinases, ribokinase family {ECO:0000313|EMBL:CBL36602.1}; TaxID=245012 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="butyrate-producing bacterium SM4/1.;"
L3_098_000G1_scaffold_657_26
Clostridium bartlettii CAG:1329, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27001..27483
DNA (483bp) protein (161aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI0003820E61
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDA10026.1}; TaxID=1263063 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium bartlettii CAG:1329.;"
transcriptional regulator
L3_098_000G1_scaffold_657_27
[Clostridium] methylpentosum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27589..29892
DNA (2304bp) protein (768aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIU5_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEG28606.1}; TaxID=537013 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] methylpentosum DSM 5476.;"
ABC transporter, permease/ATP-binding protein
L3_098_000G1_scaffold_657_28
Lachnospiraceae bacterium 2_1_46FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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29885..31744
DNA (1860bp) protein (620aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 2_1_46FAA RepID=F3BAX3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG82932.1}; TaxID=742723 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_46FAA.;"
ABC-type multidrug transport system, ATPase and permease components
L3_098_000G1_scaffold_657_29
Eubacterium sp. CAG:86, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31889..32473
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:86 RepID=R5E8K5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX85102.1}; TaxID=1262895 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:86.;"
Protein of unknown function (DUF1653).
L3_098_000G1_scaffold_657_30
Clostridium sp. CAG:230, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32792..33724)
DNA (933bp) protein (311aa)
carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=1 Tax=Clostridium sp. CAG:230 RepID=R6DLR2_9CLOT
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=1262782 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:230.;"
Displaying items 1-30 of 36 in total

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