ggKbase home page

L3_098_000G1_scaffold_756

Search features with annotation key words

Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_098_000G1_scaffold_756_1
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(207..1523)
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:411 RepID=R7HUD9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE43304.1}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
hypothetical protein
L3_098_000G1_scaffold_756_2
Clostridium sp. CAG:411, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(2009..3781)
DNA (1773bp) protein (591aa)
Arginine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000256|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00123}; TaxID=1262802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:411.;"
argS; arginyl-tRNA synthetase (EC:6.1.1.19)
Arginine--tRNA ligase n=1 Tax=Clostridium sp. CAG:411 RepID=R7HXR2_9CLOT
L3_098_000G1_scaffold_756_3
Roseburia sp. CAG:471, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4206..4397)
DNA (192bp) protein (64aa)
Putative stress-responsive transcriptional regulator n=2 Tax=Lachnospiraceae RepID=R6GF01_9FIRM
Putative stress-responsive transcriptional regulator {ECO:0000313|EMBL:CDE01894.1}; TaxID=1262948 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:471.;"
Putative stress-responsive transcriptional regulator
L3_098_000G1_scaffold_756_4
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4530..5384)
DNA (855bp) protein (285aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KNP9_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41650.1}; Flags: Precursor;; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_756_5
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5381..6196)
DNA (816bp) protein (272aa)
Putative uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JRJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN35022.1}; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
hypothetical protein
L3_098_000G1_scaffold_756_6
Firmicutes bacterium CAG:56, Firmicutes, Bacteria

Not on your lists

comp(6197..6514)
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:56 RepID=R6BK45_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA63565.1}; TaxID=1263031 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:56.;"
PadR-like family transcriptional regulator
L3_098_000G1_scaffold_756_7
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6790..8286)
DNA (1497bp) protein (499aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IWM7_9FIRM
L3_098_000G1_scaffold_756_8
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8287..9279)
DNA (993bp) protein (331aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EFF69340.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EFF69340.1};; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RXH8_9FIRM
L3_098_000G1_scaffold_756_9
Roseburia inulinivorans, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9381..10553)
DNA (1173bp) protein (391aa)
Galactokinase {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00025843}; EC=2.7.1.6 {ECO:0000256|HAMAP-Rule:MF_00246, ECO:0000256|SAAS:SAAS00015833};; Galactose kinase {ECO:0000256|HAMAP-Rule:MF_00246}; TaxID=622312 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia inulinivorans DSM 16841.;"
galactokinase (EC:2.7.1.6)
Galactokinase n=1 Tax=Roseburia inulinivorans DSM 16841 RepID=C0FU89_9FIRM
L3_098_000G1_scaffold_756_10
Lachnospiraceae bacterium 9_1_43BFAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10693..11613)
DNA (921bp) protein (307aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=E9RWK2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGG85567.1}; TaxID=658088 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 9_1_43BFAA.;"
ArsR family transcriptional regulator
L3_098_000G1_scaffold_756_11
[Clostridium] litorale, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11829..12005
DNA (177bp) protein (59aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0JCC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KDR94775.1}; TaxID=1121324 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] litorale DSM 5388.;"
hypothetical protein
L3_098_000G1_scaffold_756_12
Lachnospiraceae bacterium CAG:25, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12096..12785)
DNA (690bp) protein (230aa)
L-ribulose 5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Anaerostipes hadrus DSM 3319 RepID=L1PVS0_9FIRM
L-ribulose 5-phosphate 4-epimerase {ECO:0000313|EMBL:CDA32939.1}; TaxID=1262984 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; environmental samples.;" source="Lachnospiraceae bacterium CAG:25.;"
L3_098_000G1_scaffold_756_13
Firmicutes bacterium CAG:424, Firmicutes, Bacteria

Not on your lists

comp(12815..13915)
DNA (1101bp) protein (367aa)
Transcriptional regulator n=1 Tax=Firmicutes bacterium CAG:424 RepID=R6RCX0_9FIRM
Transcriptional regulator {ECO:0000313|EMBL:CDC46723.1}; TaxID=1263022 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:424.;"
LacI family transcriptional regulator
L3_098_000G1_scaffold_756_14
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14101..15057)
DNA (957bp) protein (319aa)
Alpha/beta hydrolase, N-terminal protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JSU3_CELLD
alpha/beta hydrolase
Alpha/beta hydrolase, N-terminal protein {ECO:0000313|EMBL:ADZ84064.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_098_000G1_scaffold_756_15
Mageeibacillus indolicus, Mageeibacillus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15360..15530)
DNA (171bp) protein (57aa)
Acetyltransferase, GNAT family n=1 Tax=Clostridiales genomosp. BVAB3 (strain UPII9-5) RepID=D3QZS2_CLOB3
GNAT family acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ADC90948.1}; TaxID=699246 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Mageeibacillus.;" source="Mageeibacillus indolicus (strain UPII9-5) (Clostridiales genomosp.; BVAB3 (strain UPII9-5)).;"
L3_098_000G1_scaffold_756_16
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16076..16495)
DNA (420bp) protein (140aa)
Nitrogen regulatory protein P-II n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK73_9CLOT
Nitrogen regulatory protein P-II {ECO:0000313|EMBL:EEA83536.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
nitrogen regulatory protein P-II
L3_098_000G1_scaffold_756_17
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16452..17738)
DNA (1287bp) protein (429aa)
Ammonium transporter n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FK72_9CLOT
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
ammonium transporter
L3_098_000G1_scaffold_756_18
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17980..19314)
DNA (1335bp) protein (445aa)
glutamate dehydrogenase (EC:1.4.1.4)
Glutamate dehydrogenase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IP05_9FIRM
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
L3_098_000G1_scaffold_756_19
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

19847..20725
DNA (879bp) protein (293aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=G1VTW2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO27093.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
hypothetical protein
L3_098_000G1_scaffold_756_20
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20901..22766)
DNA (1866bp) protein (622aa)
Glycerophosphoryl diester phosphodiesterase n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KPG8_CLOPH
glycerophosphoryl diester phosphodiesterase
Glycerophosphoryl diester phosphodiesterase {ECO:0000313|EMBL:ABX43242.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_756_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23068..25212
DNA (2145bp) protein (715aa)
Beta-lactamase n=6 Tax=Clostridium difficile RepID=G6B9X8_CLODI
Beta-lactamase {ECO:0000313|EMBL:EHJ28737.1}; TaxID=997827 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile 002-P50-2011.;"
cell surface protein penicillin-binding protein
L3_098_000G1_scaffold_756_22
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25454..27133)
DNA (1680bp) protein (560aa)
von Willebrand factor type A n=7 Tax=Clostridium thermocellum RepID=A3DK47_CLOTH
von Willebrand factor type A
von Willebrand factor type A {ECO:0000313|EMBL:ABN54326.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_098_000G1_scaffold_756_23
Cellulosilyticum lentocellum, Cellulosilyticum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27167..27877)
DNA (711bp) protein (237aa)
Uncharacterized protein n=1 Tax=Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB 11756 / RHM5) RepID=F2JM76_CELLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ82287.1}; TaxID=642492 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Cellulosilyticum.;" source="Cellulosilyticum lentocellum (strain ATCC 49066 / DSM 5427 / NCIMB; 11756 / RHM5) (Clostridium lentocellum).;"
L3_098_000G1_scaffold_756_24
Clostridium sp. CAG:253, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28212..31088)
DNA (2877bp) protein (959aa)
Beta-galactosidase/beta-glucuronidase n=1 Tax=Clostridium sp. CAG:253 RepID=R6M6S4_9CLOT
Beta-galactosidase/beta-glucuronidase {ECO:0000313|EMBL:CDB90026.1}; TaxID=1262785 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:253.;"
glycoside hydrolase family 2
L3_098_000G1_scaffold_756_25
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31350..32384
DNA (1035bp) protein (345aa)
Uncharacterized protein n=7 Tax=Clostridium thermocellum RepID=E6UM43_CLOTL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABN52661.1}; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 /; NCIMB 10682 / NRRL B-4536 / VPI 7372) (Ruminiclostridium; thermocellum).;"
L3_098_000G1_scaffold_756_26
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32389..33627)
DNA (1239bp) protein (413aa)
Amidohodrolase n=2 Tax=Clostridium acetobutylicum RepID=F7ZPT1_CLOAT
amidohydrolase
Predicted amidohydrolase (Dihydroorothase family) {ECO:0000313|EMBL:AAK81264.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG; 5710 / VKM B-1787).;"
L3_098_000G1_scaffold_756_27
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33898..34089
DNA (192bp) protein (64aa)
4Fe-4S ferredoxin iron-sulfur binding domain protein n=1 Tax=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) RepID=B8I6N6_CLOCE
4Fe-4S ferredoxin
Ferredoxin {ECO:0000313|EMBL:EPR13969.1}; TaxID=1330534 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens C7.;"
L3_098_000G1_scaffold_756_28
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34206..35339)
DNA (1134bp) protein (378aa)
Spore germination protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KKP3_CLOPH
spore germination protein
Spore germination protein {ECO:0000313|EMBL:ABX41214.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
L3_098_000G1_scaffold_756_29
unknown

Not on your lists

comp(35336..35548)
DNA (213bp) protein (71aa)

This feature has no annotations

L3_098_000G1_scaffold_756_30
Lachnoclostridium phytofermentans, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35551..36648)
DNA (1098bp) protein (366aa)
Putative uncharacterized protein n=1 Tax=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) RepID=A9KKP4_CLOPH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX41215.1}; TaxID=357809 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg); (Lachnoclostridium phytofermentans).;"
Displaying items 1-30 of 34 in total

View Taxonomy